| Variant ID | 1047 |
|---|---|
| Entrez Gene ID | 56927 |
| Gene | GPR108 (GeneCards) |
| Location | hg19 19:6735688-6735688
hg38 19:6735677-6735677 |
| Disease | Human Skin Fibroblasts (view all the variants in this disease) |
| Method | HiSeq 2500 |
| Mutation(HGVS format) | NC_000019.9:g.6735688 G>A (Genome Assembly: hg19) |
| Exon or Intron | Exon |
|---|---|
| Position in protein | 107 |
| Amino acid changes in protein | Q > * |
| Position in cDNA | NA |
| Changes in cDNA | NA > NA |
| mRNA accession | NA |
| mRNA length | NA |
| Reference length | 59128983 |
| MAF in gnomAD genome (version 2.0.1) | 0 |
|---|---|
| EIGEN score | 0.1626 |
| CADD Raw score (version 1.3) | 8.080249 (Deleterious) |
| FATHMM raw prediction score | 0.52871 (Tolerated) |
| LRT score | 0.161 |
| MutationTaster score | 1 (Deleterious) |
| FitCons score | 0.733 (Highly Significant p < 0.003 ) |
| Genomic Evolutionary Rate Profiling (GERP) score | 0.756 |
| PhyloP score based on multiple alignment of 100 vertebrates | -0.053 |
| PhastCons score based on multiple alignment of 100 vertebrates | 0 |
| SiPhy log transformed odds ratio on multiple alignment of 29 mammals | 1.674 |
| Deleterious probability by DeFine | 0.684 (Deleterious) |
| Entrez Gene ID | 56927 (NCBI Gene) |
|---|---|
| Official Gene Symbol | GPR108 (GeneCards) |
| Number of variants in GPR108 in this database | 1 (view all the variants) |
| Full name | G protein-coupled receptor 108 |
| Band | 19p13.3 |
| Other IDs | Vega: OTTHUMG00000170129 HGNC: HGNC:17829 Ensembl: ENSG00000125734 |
| Other names | LUSTR2 |
| Summary | None |
| Individual ID | 27788131.02 (view all the variants in this individual) |
|---|---|
| Pubmed ID | 27788131 |
| Whose mosaic mutation | Normal |
| Phenotype | 1 |
| Disease | Human Skin Fibroblasts (view all the variants in this disease) |
| OMIM ID | 120353 |
| Pubmed ID | 27788131 |
|---|---|
| Title | The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts. |
| Journal | PLoS Genetics |
| Publication date | 2016.10 |
| Disease | Human Skin Fibroblasts |
| Population | Caucasian |
| Number of cases | Male cases: 2; |