| Variant ID | 10479 |
|---|---|
| Entrez Gene ID | 10392 |
| Gene | NOD1 (GeneCards) |
| Location | hg19 7:30504643-30504643
hg38 7:30465027-30465027 |
| Disease | Asymptomatic |
| Method | HiSeq X Ten |
| Mutation(HGVS format) | NC_000007.13:g.30504643 T>G (Genome Assembly: GRCh37) |
| Exon or Intron | NA |
|---|---|
| Position in protein | NA |
| Amino acid changes in protein | NA > NA |
| Position in cDNA | NA |
| Changes in cDNA | NA > NA |
| mRNA accession | NA |
| mRNA length | NA |
| Reference length | 159138663 |
| MAF in gnomAD genome (version 2.0.1) | 0 |
|---|---|
| EIGEN score | -0.5602 |
| CADD Raw score (version 1.3) | -0.258985 (Deleterious) |
| FATHMM raw prediction score | 0.10853 (Tolerated) |
| Deleterious probability by DeFine | 0.6122 (Deleterious) |
| Entrez Gene ID | 10392 (NCBI Gene) |
|---|---|
| Official Gene Symbol | NOD1 (GeneCards) |
| Number of variants in NOD1 in this database | 3 (view all the variants) |
| Full name | nucleotide binding oligomerization domain containing 1 |
| Band | 7p14.3 |
| Other IDs | Vega: OTTHUMG00000023923 OMIM: 605980 HGNC: HGNC:16390 Ensembl: ENSG00000106100 |
| Other names | CARD4, NLRC1, CLR7.1 |
| Summary | This gene encodes a member of the nucleotide-binding oligomerization domain (NOD)-like receptor (NLR) family of proteins. The encoded protein plays a role in innate immunity by acting as a pattern-recognition receptor (PRR) that binds bacterial peptidoglycans and initiates inflammation. This protein has also been implicated in the immune response to viral and parasitic infection. Major structural features of this protein include an N-terminal caspase recruitment domain (CARD), a centrally located nucleotide-binding domain (NBD), and 10 tandem leucine-rich repeats (LRRs) in its C terminus. The CARD is involved in apoptotic signaling, LRRs participate in protein-protein interactions, and mutations in the NBD may affect the process of oligomerization and subsequent function of the LRR domain. Mutations in this gene are associated with asthma, inflammatory bowel disease, Behcet disease and sarcoidosis in human patients. [provided by RefSeq, Aug 2017] |
| Individual ID | 29217584.05 (view all the variants in this individual) |
|---|---|
| Pubmed ID | 29217584 |
| Whose mosaic mutation | Normal |
| Phenotype | 1 |
| Disease | Asymptomatic |
| OMIM ID |
| Pubmed ID | 29217584 |
|---|---|
| Title | Aging and neurodegeneration are associated with increased mutations in single human neurons. |
| Journal | Science |
| Publication date | 2018.02 |
| Disease | Cockayne syndrome Xeroderma Pigmentosum |
| Number of cases | Male cases: 3; Female cases: 6; cases of unknown sex: 15; |