Overview

Variant ID 1233
Entrez Gene ID 50509
Gene COL5A3 (GeneCards)
Location hg19 19:10092741-10092741
hg38 19:9982065-9982065
Disease Autism Spectrum Disorders (view all the variants in this disease)
Method NextSeq500 v2
Mutation(HGVS format) NC_000019.9:g.10092741_10092741 del (Genome Assembly: hg19)

Other information

Exon or Intron Exon
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NM_015719.3
mRNA length 6192
Reference length 59128983

Annotations and predictions

Deleterious probability by DeFine 0.9166 (Deleterious)
Entrez Gene ID 50509 (NCBI Gene)
Official Gene Symbol COL5A3 (GeneCards)
Number of variants in COL5A3 in this database 6 (view all the variants)
Full name collagen type V alpha 3 chain
Band 19p13.2
Other IDs Vega: OTTHUMG00000150019
OMIM: 120216
HGNC: HGNC:14864
Ensembl: ENSG00000080573
Other names None
Summary This gene encodes an alpha chain for one of the low abundance fibrillar collagens. Fibrillar collagen molecules are trimers that can be composed of one or more types of alpha chains. Type V collagen is found in tissues containing type I collagen and appears to regulate the assembly of heterotypic fibers composed of both type I and type V collagen. This gene product is closely related to type XI collagen and it is possible that the collagen chains of types V and XI constitute a single collagen type with tissue-specific chain combinations. Mutations in this gene are thought to be responsible for the symptoms of a subset of patients with Ehlers-Danlos syndrome type III. Messages of several sizes can be detected in northern blots but sequence information cannot confirm the identity of the shorter messages. [provided by RefSeq, Jul 2008]

Individual #1

Individual ID 28867142.32 (view all the variants in this individual)
Pubmed ID 28867142
Whose mosaic mutation Male Patient  
Origin of mosaic mutation in patients de novo
Phenotype 3  
Disease Autism Spectrum Disorders (view all the variants in this disease)
OMIM ID 209850

Publication #1: 28867142

Pubmed ID 28867142
Title Exonic Mosaic Mutations Contribute Risk for Autism Spectrum Disorder
Journal American Journal of Human Genetics
Publication date 2017.08
Disease Autism Spectrum Disorders
Incidence 0.01
Number of cases cases of unknown sex: 247;