Overview

Variant ID 124
Entrez Gene ID 114548
Gene NLRP3 (GeneCards)
Location hg19 1:247587657-247587657
hg38 1:247424355-247424355
Disease CINCA syndrome (view all the variants in this disease)
Method Roche454
Mutation(HGVS format) NC_000001.10:g.247587657 G>T (Genome Assembly: hg19)

Other information

Exon or Intron Exon
Position in protein 302
Amino acid changes in protein F > L
Position in cDNA 906
Changes in cDNA C > A
mRNA accession NM_001243133.1
mRNA length 3105
Reference length 249250621

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
Variant IDs in COSMIC (version 89) 2052582
Variant occurences in COSMIC 2(large_intestine)
EIGEN score -0.0614
CADD Raw score (version 1.3) 0.632598 (Deleterious)
FATHMM raw prediction score 0.85386 (Tolerated)
Deleterious probability by DeFine 0.7556 (Deleterious)
Entrez Gene ID 114548 (NCBI Gene)
Official Gene Symbol NLRP3 (GeneCards)
Number of variants in NLRP3 in this database 78 (view all the variants)
Full name NLR family pyrin domain containing 3
Band 1q44
Other IDs Vega: OTTHUMG00000040647
OMIM: 606416
HGNC: HGNC:16400
Ensembl: ENSG00000162711
Other names AII, AVP, FCU, MWS, FCAS, KEFH, CIAS1, FCAS1, NALP3, C1orf7, CLR1.1, DFNA34, PYPAF1, AGTAVPRL
Summary This gene encodes a pyrin-like protein containing a pyrin domain, a nucleotide-binding site (NBS) domain, and a leucine-rich repeat (LRR) motif. This protein interacts with the apoptosis-associated speck-like protein PYCARD/ASC, which contains a caspase recruitment domain, and is a member of the NALP3 inflammasome complex. This complex functions as an upstream activator of NF-kappaB signaling, and it plays a role in the regulation of inflammation, the immune response, and apoptosis. Mutations in this gene are associated with familial cold autoinflammatory syndrome (FCAS), Muckle-Wells syndrome (MWS), chronic infantile neurological cutaneous and articular (CINCA) syndrome, and neonatal-onset multisystem inflammatory disease (NOMID). Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. Alternative 5' UTR structures are suggested by available data; however, insufficient evidence is available to determine if all of the represented 5' UTR splice patterns are biologically valid. [provided by RefSeq, Oct 2008]

Individual #1

Individual ID 22279087.04 (view all the variants in this individual)
Pubmed ID 22279087
Whose mosaic mutation Patient  
Phenotype 3  
Disease CINCA syndrome (view all the variants in this disease)
OMIM ID 607115

Publication #1: 22279087

Pubmed ID 22279087
Title Detection of Base Substitution-Type Somatic Mosaicism of the NLRP3 Gene with >99.9% Statistical Confidence by Massively Parallel Sequencing
Journal DNA research
Publication date 2012.04
Disease CINCA syndrome
Number of cases cases of unknown sex: 4;