| Variant ID | 12598 |
|---|---|
| Entrez Gene ID | 23362 |
| Gene | PSD3 (GeneCards) |
| Location | hg19 8:18772403-18772403
hg38 8:18914893-18914893 |
| Disease | Cockayne syndrome (view all the variants in this disease) |
| Method | HiSeq X Ten |
| Mutation(HGVS format) | NC_000008.10:g.18772403 C>G (Genome Assembly: GRCh37) |
| Exon or Intron | NA |
|---|---|
| Position in protein | NA |
| Amino acid changes in protein | NA > NA |
| Position in cDNA | NA |
| Changes in cDNA | NA > NA |
| mRNA accession | NA |
| mRNA length | NA |
| Reference length | 146364022 |
| MAF in gnomAD genome (version 2.0.1) | 0 |
|---|---|
| EIGEN score | -0.334 |
| CADD Raw score (version 1.3) | -0.094286 (Deleterious) |
| FATHMM raw prediction score | 0.09426 (Tolerated) |
| Deleterious probability by DeFine | 0.075 (Neutral) |
| Entrez Gene ID | 23362 (NCBI Gene) |
|---|---|
| Official Gene Symbol | PSD3 (GeneCards) |
| Number of variants in PSD3 in this database | 16 (view all the variants) |
| Full name | pleckstrin and Sec7 domain containing 3 |
| Band | 8p22 |
| Other IDs | Vega: OTTHUMG00000163711 OMIM: 614440 HGNC: HGNC:19093 Ensembl: ENSG00000156011 |
| Other names | EFA6D, EFA6R, HCA67 |
| Summary | None |
| Individual ID | 29217584.16 (view all the variants in this individual) |
|---|---|
| Pubmed ID | 29217584 |
| Whose mosaic mutation | Female Patient |
| Phenotype | 3 |
| Disease | Cockayne syndrome (view all the variants in this disease) |
| OMIM ID | 216400 |
| Pubmed ID | 29217584 |
|---|---|
| Title | Aging and neurodegeneration are associated with increased mutations in single human neurons. |
| Journal | Science |
| Publication date | 2018.02 |
| Disease | Cockayne syndrome Xeroderma Pigmentosum |
| Number of cases | Male cases: 3; Female cases: 6; cases of unknown sex: 15; |