| Variant ID | 13643 |
|---|---|
| Entrez Gene ID | 158038 |
| Gene | LINGO2 (GeneCards) |
| Location | hg19 9:29129334-29129334
hg38 9:29129336-29129336 |
| Disease | Cockayne syndrome (view all the variants in this disease) |
| Method | HiSeq X Ten |
| Mutation(HGVS format) | NC_000009.11:g.29129334 G>A (Genome Assembly: GRCh37) |
| Exon or Intron | NA |
|---|---|
| Position in protein | NA |
| Amino acid changes in protein | NA > NA |
| Position in cDNA | NA |
| Changes in cDNA | NA > NA |
| mRNA accession | NA |
| mRNA length | NA |
| Reference length | 141213431 |
| MAF in gnomAD genome (version 2.0.1) | 0 |
|---|---|
| EIGEN score | -0.3344 |
| CADD Raw score (version 1.3) | -0.065841 (Deleterious) |
| FATHMM raw prediction score | 0.10794 (Tolerated) |
| Deleterious probability by DeFine | 0.0908 (Neutral) |
| Entrez Gene ID | 158038 (NCBI Gene) |
|---|---|
| Official Gene Symbol | LINGO2 (GeneCards) |
| Number of variants in LINGO2 in this database | 42 (view all the variants) |
| Full name | leucine rich repeat and Ig domain containing 2 |
| Band | 9p21.2-p21.1 |
| Other IDs | Vega: OTTHUMG00000019721 OMIM: 609793 HGNC: HGNC:21207 Ensembl: ENSG00000174482 |
| Other names | LERN3, LRRN6C |
| Summary | None |
| Individual ID | 29217584.17 (view all the variants in this individual) |
|---|---|
| Pubmed ID | 29217584 |
| Whose mosaic mutation | Female Patient |
| Phenotype | 3 |
| Disease | Cockayne syndrome (view all the variants in this disease) |
| OMIM ID | 216400 |
| Pubmed ID | 29217584 |
|---|---|
| Title | Aging and neurodegeneration are associated with increased mutations in single human neurons. |
| Journal | Science |
| Publication date | 2018.02 |
| Disease | Cockayne syndrome Xeroderma Pigmentosum |
| Number of cases | Male cases: 3; Female cases: 6; cases of unknown sex: 15; |