Overview

Variant ID 1468
Entrez Gene ID 114548
Gene NLRP3 (GeneCards)
Location hg19 1:247588443-247588443
hg38 1:247425141-247425141
Disease Cryopyrin associated periodic syndrome (view all the variants in this disease)
Method MiSeq
Mutation(HGVS format) NC_000001.10:g.247588443 C>A (Genome Assembly: hg19)

Other information

Exon or Intron Exon
Position in protein 566
Amino acid changes in protein F > L
Position in cDNA 1698
Changes in cDNA C > A
mRNA accession NM_001079821.2
mRNA length 3862
Reference length 249250621

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score 1.1179
CADD Raw score (version 1.3) 1.161236 (Deleterious)
FATHMM raw prediction score 0.93111 (Tolerated)
Deleterious probability by DeFine 0.6544 (Deleterious)
Entrez Gene ID 114548 (NCBI Gene)
Official Gene Symbol NLRP3 (GeneCards)
Number of variants in NLRP3 in this database 78 (view all the variants)
Full name NLR family pyrin domain containing 3
Band 1q44
Other IDs Vega: OTTHUMG00000040647
OMIM: 606416
HGNC: HGNC:16400
Ensembl: ENSG00000162711
Other names AII, AVP, FCU, MWS, FCAS, KEFH, CIAS1, FCAS1, NALP3, C1orf7, CLR1.1, DFNA34, PYPAF1, AGTAVPRL
Summary This gene encodes a pyrin-like protein containing a pyrin domain, a nucleotide-binding site (NBS) domain, and a leucine-rich repeat (LRR) motif. This protein interacts with the apoptosis-associated speck-like protein PYCARD/ASC, which contains a caspase recruitment domain, and is a member of the NALP3 inflammasome complex. This complex functions as an upstream activator of NF-kappaB signaling, and it plays a role in the regulation of inflammation, the immune response, and apoptosis. Mutations in this gene are associated with familial cold autoinflammatory syndrome (FCAS), Muckle-Wells syndrome (MWS), chronic infantile neurological cutaneous and articular (CINCA) syndrome, and neonatal-onset multisystem inflammatory disease (NOMID). Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. Alternative 5' UTR structures are suggested by available data; however, insufficient evidence is available to determine if all of the represented 5' UTR splice patterns are biologically valid. [provided by RefSeq, Oct 2008]

Individual #1

Individual ID 28750028.01 (view all the variants in this individual)
Pubmed ID 28750028
Whose mosaic mutation Patient  
Phenotype 3  
Disease Cryopyrin associated periodic syndrome (view all the variants in this disease)
OMIM ID 606416

Publication #1: 28750028

Pubmed ID 28750028
Title Clinical impact of a targeted next-generation sequencing gene panel for autoinflammation and vasculitis.
Journal PLoS One
Publication date 2017.07
Disease Cryopyrin associated periodic syndrome
Number of cases cases of unknown sex: 2;