Overview

Variant ID 16417
Entrez Gene ID 775
Gene CACNA1C (GeneCards)
Location hg19 12:2220165-2220165
hg38 12:2110999-2110999
Disease Asymptomatic
Method HiSeq X Ten
Mutation(HGVS format) NC_000012.11:g.2220165 A>T (Genome Assembly: GRCh37)

Other information

Exon or Intron NA
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 133851895

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score -0.0822
CADD Raw score (version 1.3) 0.150165 (Deleterious)
FATHMM raw prediction score 0.30664 (Tolerated)
Deleterious probability by DeFine 0.4238 (Neutral)
Entrez Gene ID 775 (NCBI Gene)
Official Gene Symbol CACNA1C (GeneCards)
Number of variants in CACNA1C in this database 8 (view all the variants)
Full name calcium voltage-gated channel subunit alpha1 C
Band 12p13.33
Other IDs Vega: OTTHUMG00000150243
OMIM: 114205
HGNC: HGNC:1390
Ensembl: ENSG00000151067
Other names TS, LQT8, CACH2, CACN2, CaV1.2, CCHL1A1, CACNL1A1
Summary This gene encodes an alpha-1 subunit of a voltage-dependent calcium channel. Calcium channels mediate the influx of calcium ions into the cell upon membrane polarization. The alpha-1 subunit consists of 24 transmembrane segments and forms the pore through which ions pass into the cell. The calcium channel consists of a complex of alpha-1, alpha-2/delta, beta, and gamma subunits in a 1:1:1:1 ratio. There are multiple isoforms of each of these proteins, either encoded by different genes or the result of alternative splicing of transcripts. The protein encoded by this gene binds to and is inhibited by dihydropyridine. Alternative splicing results in many transcript variants encoding different proteins. Some of the predicted proteins may not produce functional ion channel subunits. [provided by RefSeq, Oct 2012]

Individual #1

Individual ID 29217584.09 (view all the variants in this individual)
Pubmed ID 29217584
Whose mosaic mutation Normal  
Phenotype 1  
Disease Asymptomatic
OMIM ID

Publication #1: 29217584

Pubmed ID 29217584
Title Aging and neurodegeneration are associated with increased mutations in single human neurons.
Journal Science
Publication date 2018.02
Disease Cockayne syndrome Xeroderma Pigmentosum
Number of cases Male cases: 3; Female cases: 6; cases of unknown sex: 15;