Overview

Variant ID 16900
Entrez Gene ID 5830
Gene PEX5 (GeneCards)
Location hg19 12:7386817-7386817
hg38 12:7234221-7234221
Disease Cockayne syndrome (view all the variants in this disease)
Method HiSeq X Ten
Mutation(HGVS format) NC_000012.11:g.7386817 G>T (Genome Assembly: GRCh37)

Other information

Exon or Intron NA
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 133851895

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score -0.1777
CADD Raw score (version 1.3) 0.367547 (Deleterious)
FATHMM raw prediction score 0.17098 (Tolerated)
Deleterious probability by DeFine 0.0497 (Neutral)
Entrez Gene ID 5830 (NCBI Gene)
Official Gene Symbol PEX5 (GeneCards)
Number of variants in PEX5 in this database 1 (view all the variants)
Full name peroxisomal biogenesis factor 5
Band 12p13.31
Other IDs Vega: OTTHUMG00000168175
OMIM: 600414
HGNC: HGNC:9719
Ensembl: ENSG00000139197
Other names PXR1, PBD2A, PBD2B, PTS1R, RCDP5, PTS1-BP
Summary The product of this gene binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import. Peroxins (PEXs) are proteins that are essential for the assembly of functional peroxisomes. The peroxisome biogenesis disorders (PBDs) are a group of genetically heterogeneous autosomal recessive, lethal diseases characterized by multiple defects in peroxisome function. The peroxisomal biogenesis disorders are a heterogeneous group with at least 14 complementation groups and with more than 1 phenotype being observed in cases falling into particular complementation groups. Although the clinical features of PBD patients vary, cells from all PBD patients exhibit a defect in the import of one or more classes of peroxisomal matrix proteins into the organelle. Defects in this gene are a cause of neonatal adrenoleukodystrophy (NALD), a cause of Zellweger syndrome (ZWS) as well as may be a cause of infantile Refsum disease (IRD). Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Oct 2008]

Individual #1

Individual ID 29217584.17 (view all the variants in this individual)
Pubmed ID 29217584
Whose mosaic mutation Female Patient  
Phenotype 3  
Disease Cockayne syndrome (view all the variants in this disease)
OMIM ID 216400

Publication #1: 29217584

Pubmed ID 29217584
Title Aging and neurodegeneration are associated with increased mutations in single human neurons.
Journal Science
Publication date 2018.02
Disease Cockayne syndrome Xeroderma Pigmentosum
Number of cases Male cases: 3; Female cases: 6; cases of unknown sex: 15;