Overview

Variant ID 17132
Entrez Gene ID 259232
Gene NALCN (GeneCards)
Location hg19 13:101807884-101807884
hg38 13:101155533-101155533
Disease Asymptomatic
Method HiSeq X Ten
Mutation(HGVS format) NC_000013.10:g.101807884 G>A (Genome Assembly: GRCh37)

Other information

Exon or Intron NA
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 115169878

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score -0.5833
CADD Raw score (version 1.3) -0.480601 (Deleterious)
FATHMM raw prediction score 0.07979 (Tolerated)
Deleterious probability by DeFine 0.347 (Neutral)
Entrez Gene ID 259232 (NCBI Gene)
Official Gene Symbol NALCN (GeneCards)
Number of variants in NALCN in this database 5 (view all the variants)
Full name sodium leak channel, non-selective
Band 13q32.3-q33.1
Other IDs Vega: OTTHUMG00000017295
OMIM: 611549
HGNC: HGNC:19082
Ensembl: ENSG00000102452
Other names IHPRF, INNFD, CanIon, IHPRF1, VGCNL1, CLIFAHDD, bA430M15.1
Summary This gene encodes a voltage-independent, nonselective cation channel which belongs to a family of voltage-gated sodium and calcium channels that regulates the resting membrane potential and excitability of neurons. This family is expressed throughout the nervous system and conducts a persistent sodium leak current that contributes to tonic neuronal excitability. The encoded protein forms a channelosome complex that includes G-protein-coupled receptors, UNC-79, UNC-80, NCA localization factor-1, and src family tyrosine kinases. Naturally occurring mutations in this gene are associated with infantile neuroaxonal dystrophy, infantile hypotonia with psychomotor retardation and characteristic facies (IHPRF) syndrome, and congenital contractures of the limbs and face with hypotonia and developmental delay (CLIFAHDD) syndrome. A knockout of the orthologous gene in mice results in paralysis with a severely disrupted respiratory rhythm, and lethality within 24 hours after birth. [provided by RefSeq, Apr 2017]

Individual #1

Individual ID 29217584.02 (view all the variants in this individual)
Pubmed ID 29217584
Whose mosaic mutation Normal  
Phenotype 1  
Disease Asymptomatic
OMIM ID

Publication #1: 29217584

Pubmed ID 29217584
Title Aging and neurodegeneration are associated with increased mutations in single human neurons.
Journal Science
Publication date 2018.02
Disease Cockayne syndrome Xeroderma Pigmentosum
Number of cases Male cases: 3; Female cases: 6; cases of unknown sex: 15;