Overview

Variant ID 19312
Entrez Gene ID 11214
Gene AKAP13 (GeneCards)
Location hg19 15:86034193-86034193
hg38 15:85490962-85490962
Disease Xeroderma Pigmentosum (view all the variants in this disease)
Method HiSeq X Ten
Mutation(HGVS format) NC_000015.9:g.86034193 G>A (Genome Assembly: GRCh37)

Other information

Exon or Intron NA
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 102531392

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score 0.052
CADD Raw score (version 1.3) 0.373807 (Deleterious)
FATHMM raw prediction score 0.1365 (Tolerated)
Deleterious probability by DeFine 0.4369 (Neutral)
Entrez Gene ID 11214 (NCBI Gene)
Official Gene Symbol AKAP13 (GeneCards)
Number of variants in AKAP13 in this database 2 (view all the variants)
Full name A-kinase anchoring protein 13
Band 15q25.3
Other IDs Vega: OTTHUMG00000172205
OMIM: 604686
HGNC: HGNC:371
Ensembl: ENSG00000170776
Other names BRX, LBC, p47, HA-3, Ht31, c-lbc, PRKA13, AKAP-13, AKAP-Lbc, ARHGEF13, PROTO-LB, PROTO-LBC
Summary The A-kinase anchor proteins (AKAPs) are a group of structurally diverse proteins which have the common function of binding to the regulatory subunit of protein kinase A (PKA) and confining the holoenzyme to discrete locations within the cell. This gene encodes a member of the AKAP family. Alternative splicing of this gene results in multiple transcript variants encoding different isoforms containing c-terminal dbl oncogene homology (DH) and pleckstrin homology (PH) domains. The DH domain is associated with guanine nucleotide exchange activation for the Rho/Rac family of small GTP binding proteins, resulting in the conversion of the inactive GTPase to the active form capable of transducing signals. The PH domain has multiple functions. Therefore, these isoforms function as scaffolding proteins to coordinate a Rho signaling pathway, function as protein kinase A-anchoring proteins and, in addition, enhance ligand-dependent activity of estrogen receptors alpha and beta. [provided by RefSeq, Jul 2012]

Individual #1

Individual ID 29217584.23 (view all the variants in this individual)
Pubmed ID 29217584
Whose mosaic mutation Female Patient  
Phenotype 3  
Disease Xeroderma Pigmentosum (view all the variants in this disease)
OMIM ID 278700

Publication #1: 29217584

Pubmed ID 29217584
Title Aging and neurodegeneration are associated with increased mutations in single human neurons.
Journal Science
Publication date 2018.02
Disease Cockayne syndrome Xeroderma Pigmentosum
Number of cases Male cases: 3; Female cases: 6; cases of unknown sex: 15;