| Variant ID | 19483 |
|---|---|
| Entrez Gene ID | 6299 |
| Gene | SALL1 (GeneCards) |
| Location | hg19 16:51409132-51409132
hg38 16:51375221-51375221 |
| Disease | Asymptomatic |
| Method | HiSeq X Ten |
| Mutation(HGVS format) | NC_000016.9:g.51409132 G>A (Genome Assembly: GRCh37) |
| Exon or Intron | NA |
|---|---|
| Position in protein | NA |
| Amino acid changes in protein | NA > NA |
| Position in cDNA | NA |
| Changes in cDNA | NA > NA |
| mRNA accession | NA |
| mRNA length | NA |
| Reference length | 90354753 |
| MAF in gnomAD genome (version 2.0.1) | 0 |
|---|---|
| EIGEN score | -0.3809 |
| CADD Raw score (version 1.3) | -0.21509 (Deleterious) |
| FATHMM raw prediction score | 0.09634 (Tolerated) |
| Deleterious probability by DeFine | 0.5611 (Deleterious) |
| Entrez Gene ID | 6299 (NCBI Gene) |
|---|---|
| Official Gene Symbol | SALL1 (GeneCards) |
| Number of variants in SALL1 in this database | 95 (view all the variants) |
| Full name | spalt like transcription factor 1 |
| Band | 16q12.1 |
| Other IDs | Vega: OTTHUMG00000133176 OMIM: 602218 HGNC: HGNC:10524 Ensembl: ENSG00000103449 |
| Other names | TBS, HSAL1, Sal-1, ZNF794, HEL-S-89 |
| Summary | The protein encoded by this gene is a zinc finger transcriptional repressor and may be part of the NuRD histone deacetylase complex (HDAC). Defects in this gene are a cause of Townes-Brocks syndrome (TBS) as well as bronchio-oto-renal syndrome (BOR). Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008] |
| Individual ID | 29217584.09 (view all the variants in this individual) |
|---|---|
| Pubmed ID | 29217584 |
| Whose mosaic mutation | Normal |
| Phenotype | 1 |
| Disease | Asymptomatic |
| OMIM ID |
| Pubmed ID | 29217584 |
|---|---|
| Title | Aging and neurodegeneration are associated with increased mutations in single human neurons. |
| Journal | Science |
| Publication date | 2018.02 |
| Disease | Cockayne syndrome Xeroderma Pigmentosum |
| Number of cases | Male cases: 3; Female cases: 6; cases of unknown sex: 15; |