Overview

Variant ID 21080
Entrez Gene ID 6597
Gene SMARCA4 (GeneCards)
Location hg19 19:11126992-11126992
hg38 19:11016316-11016316
Disease Xeroderma Pigmentosum (view all the variants in this disease)
Method HiSeq X Ten
Mutation(HGVS format) NC_000019.9:g.11126992 G>A (Genome Assembly: GRCh37)

Other information

Exon or Intron NA
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 59128983

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0.0003
EIGEN score -0.2039
CADD Raw score (version 1.3) 0.262235 (Deleterious)
FATHMM raw prediction score 0.08183 (Tolerated)
Deleterious probability by DeFine 0.105 (Neutral)
Entrez Gene ID 6597 (NCBI Gene)
Official Gene Symbol SMARCA4 (GeneCards)
Number of variants in SMARCA4 in this database 2 (view all the variants)
Full name SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Band 19p13.2
Other IDs Vega: OTTHUMG00000169272
OMIM: 603254
HGNC: HGNC:11100
Ensembl: ENSG00000127616
Other names BRG1, CSS4, SNF2, SWI2, MRD16, RTPS2, BAF190, SNF2L4, SNF2LB, hSNF2b, BAF190A
Summary The protein encoded by this gene is a member of the SWI/SNF family of proteins and is similar to the brahma protein of Drosophila. Members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI, which is required for transcriptional activation of genes normally repressed by chromatin. In addition, this protein can bind BRCA1, as well as regulate the expression of the tumorigenic protein CD44. Mutations in this gene cause rhabdoid tumor predisposition syndrome type 2. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2012]

Individual #1

Individual ID 29217584.23 (view all the variants in this individual)
Pubmed ID 29217584
Whose mosaic mutation Female Patient  
Phenotype 3  
Disease Xeroderma Pigmentosum (view all the variants in this disease)
OMIM ID 278700

Publication #1: 29217584

Pubmed ID 29217584
Title Aging and neurodegeneration are associated with increased mutations in single human neurons.
Journal Science
Publication date 2018.02
Disease Cockayne syndrome Xeroderma Pigmentosum
Number of cases Male cases: 3; Female cases: 6; cases of unknown sex: 15;