Overview

Variant ID 21583
Entrez Gene ID 351
Gene APP (GeneCards)
Location hg19 21:27653442-27653442
hg38 21:26281123-26281123
Disease Asymptomatic
Method HiSeq X Ten
Mutation(HGVS format) NC_000021.8:g.27653442 G>C (Genome Assembly: GRCh37)

Other information

Exon or Intron NA
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 48129895

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score 0.1708
CADD Raw score (version 1.3) 0.663974 (Deleterious)
FATHMM raw prediction score 0.16059 (Tolerated)
Deleterious probability by DeFine 0.7581 (Deleterious)
Entrez Gene ID 351 (NCBI Gene)
Official Gene Symbol APP (GeneCards)
Number of variants in APP in this database 7 (view all the variants)
Full name amyloid beta precursor protein
Band 21q21.3
Other IDs Vega: OTTHUMG00000078438
OMIM: 104760
HGNC: HGNC:620
Ensembl: ENSG00000142192
Other names AAA, AD1, PN2, ABPP, APPI, CVAP, ABETA, PN-II, preA4, CTFgamma
Summary This gene encodes a cell surface receptor and transmembrane precursor protein that is cleaved by secretases to form a number of peptides. Some of these peptides are secreted and can bind to the acetyltransferase complex APBB1/TIP60 to promote transcriptional activation, while others form the protein basis of the amyloid plaques found in the brains of patients with Alzheimer disease. In addition, two of the peptides are antimicrobial peptides, having been shown to have bacteriocidal and antifungal activities. Mutations in this gene have been implicated in autosomal dominant Alzheimer disease and cerebroarterial amyloidosis (cerebral amyloid angiopathy). Multiple transcript variants encoding several different isoforms have been found for this gene. [provided by RefSeq, Aug 2014]

Individual #1

Individual ID 29217584.03 (view all the variants in this individual)
Pubmed ID 29217584
Whose mosaic mutation Normal  
Phenotype 1  
Disease Asymptomatic
OMIM ID

Publication #1: 29217584

Pubmed ID 29217584
Title Aging and neurodegeneration are associated with increased mutations in single human neurons.
Journal Science
Publication date 2018.02
Disease Cockayne syndrome Xeroderma Pigmentosum
Number of cases Male cases: 3; Female cases: 6; cases of unknown sex: 15;