Overview

Variant ID 21953
Entrez Gene ID 9620
Gene CELSR1 (GeneCards)
Location hg19 22:46991636-46991636
hg38 22:46595739-46595739
Disease Asymptomatic
Method HiSeq X Ten
Mutation(HGVS format) NC_000022.10:g.46991636 C>T (Genome Assembly: GRCh37)

Other information

Exon or Intron NA
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 51304566

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score -0.2163
CADD Raw score (version 1.3) 0.330079 (Deleterious)
FATHMM raw prediction score 0.12074 (Tolerated)
Deleterious probability by DeFine 0.8007 (Deleterious)
Entrez Gene ID 9620 (NCBI Gene)
Official Gene Symbol CELSR1 (GeneCards)
Number of variants in CELSR1 in this database 2 (view all the variants)
Full name cadherin EGF LAG seven-pass G-type receptor 1
Band 22q13.31
Other IDs Vega: OTTHUMG00000150423
OMIM: 604523
HGNC: HGNC:1850
Ensembl: ENSG00000075275
Other names ME2, FMI2, CDHF9, HFMI2, ADGRC1
Summary The protein encoded by this gene is a member of the flamingo subfamily, part of the cadherin superfamily. The flamingo subfamily consists of nonclassic-type cadherins; a subpopulation that does not interact with catenins. The flamingo cadherins are located at the plasma membrane and have nine cadherin domains, seven epidermal growth factor-like repeats and two laminin A G-type repeats in their ectodomain. They also have seven transmembrane domains, a characteristic unique to this subfamily. It is postulated that these proteins are receptors involved in contact-mediated communication, with cadherin domains acting as homophilic binding regions and the EGF-like domains involved in cell adhesion and receptor-ligand interactions. This particular member is a developmentally regulated, neural-specific gene which plays an unspecified role in early embryogenesis. [provided by RefSeq, Jul 2008]

Individual #1

Individual ID 29217584.15 (view all the variants in this individual)
Pubmed ID 29217584
Whose mosaic mutation Normal  
Phenotype 1  
Disease Asymptomatic
OMIM ID

Publication #1: 29217584

Pubmed ID 29217584
Title Aging and neurodegeneration are associated with increased mutations in single human neurons.
Journal Science
Publication date 2018.02
Disease Cockayne syndrome Xeroderma Pigmentosum
Number of cases Male cases: 3; Female cases: 6; cases of unknown sex: 15;