Overview

Variant ID 26047
Entrez Gene ID 5314
Gene PKHD1 (GeneCards)
Location hg19 6:51999774-51999774
hg38 6:52134976-52134976
Disease Asymptomatic
Method Single cell Sequencing Cell cloning
Mutation(HGVS format) NC_000006.11:g.51999774 G>A (Genome Assembly: GRCh37)

Other information

Exon or Intron NA
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 171115067

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0.00003235
EIGEN score -0.157
CADD Raw score (version 1.3) -0.18685 (Deleterious)
FATHMM raw prediction score 0.11229 (Tolerated)
Deleterious probability by DeFine 0.434 (Neutral)
Entrez Gene ID 5314 (NCBI Gene)
Official Gene Symbol PKHD1 (GeneCards)
Number of variants in PKHD1 in this database 9 (view all the variants)
Full name PKHD1, fibrocystin/polyductin
Band 6p12.3-p12.2
Other IDs Vega: OTTHUMG00000014841
OMIM: 606702
HGNC: HGNC:9016
Ensembl: ENSG00000170927
Other names FPC, FCYT, PKD4, ARPKD, TIGM1
Summary The protein encoded by this gene is predicted to have a single transmembrane (TM)-spanning domain and multiple copies of an immunoglobulin-like plexin-transcription-factor domain. Alternative splicing results in two transcript variants encoding different isoforms. Other alternatively spliced transcripts have been described, but the full length sequences have not been determined. Several of these transcripts are predicted to encode truncated products which lack the TM and may be secreted. Mutations in this gene cause autosomal recessive polycystic kidney disease, also known as polycystic kidney and hepatic disease-1. [provided by RefSeq, Jul 2008]

Individual #1

Individual ID 29217587.02 (view all the variants in this individual)
Pubmed ID 29217587
Whose mosaic mutation Normal  
Phenotype 1  
Disease Asymptomatic
OMIM ID