Overview

Variant ID 29211
Entrez Gene ID 2778
Gene GNAS (GeneCards)
Location hg19 20:57480424-57480424
hg38 20:58905369-58905369
Disease Autism Spectrum Disorders (view all the variants in this disease)
Method PASM
Mutation(HGVS format) NC_000020.10:g.57480424 G>A (Genome Assembly: GRCh37)

Other information

Exon or Intron Intron
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 63025520

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score 0.2713
CADD Raw score (version 1.3) 0.555255 (Deleterious)
FATHMM raw prediction score 0.23659 (Tolerated)
Deleterious probability by DeFine 0.8093 (Deleterious)
Entrez Gene ID 2778 (NCBI Gene)
Official Gene Symbol GNAS (GeneCards)
Number of variants in GNAS in this database 13 (view all the variants)
Full name GNAS complex locus
Band 20q13.32
Other IDs Vega: OTTHUMG00000033069
OMIM: 139320
HGNC: HGNC:4392
Ensembl: ENSG00000087460
Other names AHO, GSA, GSP, POH, GPSA, NESP, SCG6, SgVI, GNAS1, PITA3, C20orf45
Summary This locus has a highly complex imprinted expression pattern. It gives rise to maternally, paternally, and biallelically expressed transcripts that are derived from four alternative promoters and 5' exons. Some transcripts contain a differentially methylated region (DMR) at their 5' exons, and this DMR is commonly found in imprinted genes and correlates with transcript expression. An antisense transcript is produced from an overlapping locus on the opposite strand. One of the transcripts produced from this locus, and the antisense transcript, are paternally expressed noncoding RNAs, and may regulate imprinting in this region. In addition, one of the transcripts contains a second overlapping ORF, which encodes a structurally unrelated protein - Alex. Alternative splicing of downstream exons is also observed, which results in different forms of the stimulatory G-protein alpha subunit, a key element of the classical signal transduction pathway linking receptor-ligand interactions with the activation of adenylyl cyclase and a variety of cellular reponses. Multiple transcript variants encoding different isoforms have been found for this gene. Mutations in this gene result in pseudohypoparathyroidism type 1a, pseudohypoparathyroidism type 1b, Albright hereditary osteodystrophy, pseudopseudohypoparathyroidism, McCune-Albright syndrome, progressive osseus heteroplasia, polyostotic fibrous dysplasia of bone, and some pituitary tumors. [provided by RefSeq, Aug 2012]

Individual #1

Individual ID 28503910.88 (view all the variants in this individual)
Pubmed ID 28503910
Whose mosaic mutation Patient  
Phenotype 3  
Disease Autism Spectrum Disorders (view all the variants in this disease)
OMIM ID 209850

Publication #1: 28503910

Pubmed ID 28503910
Title Postzygotic single-nucleotide mosaicisms contribute to the etiology of autism spectrum disorder and autistic traits and the origin of mutations
Journal Human Mutation
Publication date 2017.05
Disease Autism Spectrum Disorders
Incidence 0.01
Number of cases cases of unknown sex: 215;