| Variant ID | 29214 |
|---|---|
| Entrez Gene ID | 83872 |
| Gene | HMCN1 (GeneCards) |
| Location | hg19 1:185833720-185833720
hg38 1:185864588-185864588 |
| Disease | Autism Spectrum Disorders (view all the variants in this disease) |
| Method | PASM |
| Mutation(HGVS format) | NC_000001.10:g.185833720 C>T (Genome Assembly: GRCh37) |
| Exon or Intron | Exon |
|---|---|
| Position in protein | NA |
| Amino acid changes in protein | NA > NA |
| Position in cDNA | NA |
| Changes in cDNA | NA > NA |
| mRNA accession | NA |
| mRNA length | NA |
| Reference length | 249250621 |
| MAF in gnomAD genome (version 2.0.1) | 0 |
|---|---|
| EIGEN score | 0.4354 |
| CADD Raw score (version 1.3) | 5.158424 (Deleterious) |
| FATHMM raw prediction score | 0.81635 (Tolerated) |
| SIFT score | 0.058 (Tolerated) |
| LRT score | 0 (Deleterious) |
| MutationTaster score | 1 (Deleterious) |
| MutatioinAssessor score | 0.895 (Tolerated) |
| PROVEAN score | -2.63 (Deleterious) |
| MetaSVM score | 0.881 (Deleterious) |
| MetaLR score | 0.86 (Deleterious) |
| MCAP score | 0.086 (Deleterious) |
| FitCons score | 0.554 (Highly Significant p < 0.003 ) |
| Genomic Evolutionary Rate Profiling (GERP) score | 5.43 |
| PhyloP score based on multiple alignment of 100 vertebrates | 4.945 |
| PhastCons score based on multiple alignment of 100 vertebrates | 0.977 |
| SiPhy log transformed odds ratio on multiple alignment of 29 mammals | 19.24 |
| Deleterious probability by iFish2 | 0.0529 (Neutral) |
| Deleterious probability by DeFine | 0.937 (Deleterious) |
| Entrez Gene ID | 83872 (NCBI Gene) |
|---|---|
| Official Gene Symbol | HMCN1 (GeneCards) |
| Number of variants in HMCN1 in this database | 5 (view all the variants) |
| Full name | hemicentin 1 |
| Band | 1q25.3-q31.1 |
| Other IDs | Vega: OTTHUMG00000059337 OMIM: 608548 HGNC: HGNC:19194 Ensembl: ENSG00000143341 |
| Other names | ARMD1, FBLN6, FIBL6, FIBL-6 |
| Summary | This gene encodes a large extracellular member of the immunoglobulin superfamily. A similar protein in C. elegans forms long, fine tracks at specific extracellular sites that are involved in many processes such as stabilization of the germline syncytium, anchorage of mechanosensory neurons to the epidermis, and organization of hemidesmosomes in the epidermis. Mutations in this gene may be associated with age-related macular degeneration. [provided by RefSeq, Jul 2008] |
| Individual ID | 28503910.91 (view all the variants in this individual) |
|---|---|
| Pubmed ID | 28503910 |
| Whose mosaic mutation | Patient |
| Phenotype | 3 |
| Disease | Autism Spectrum Disorders (view all the variants in this disease) |
| OMIM ID | 209850 |
| Pubmed ID | 28503910 |
|---|---|
| Title | Postzygotic single-nucleotide mosaicisms contribute to the etiology of autism spectrum disorder and autistic traits and the origin of mutations |
| Journal | Human Mutation |
| Publication date | 2017.05 |
| Disease | Autism Spectrum Disorders |
| Incidence | 0.01 |
| Number of cases | cases of unknown sex: 215; |