| Variant ID | 29527 |
|---|---|
| Entrez Gene ID | 200150 |
| Gene | PLD5 (GeneCards) |
| Location | hg19 1:242383342-242383342
hg38 1:242220040-242220040 |
| Disease | Autism Spectrum Disorders (view all the variants in this disease) |
| Method | MiSeq |
| Mutation(HGVS format) | NC_000001.10:g.242383342 T>C (Genome Assembly: hg19) |
| Exon or Intron | NA |
|---|---|
| Position in protein | NA |
| Amino acid changes in protein | NA > NA |
| Position in cDNA | NA |
| Changes in cDNA | NA > NA |
| mRNA accession | NA |
| mRNA length | NA |
| Reference length | 249250621 |
| MAF in gnomAD genome (version 2.0.1) | 0 |
|---|---|
| EIGEN score | -0.2242 |
| CADD Raw score (version 1.3) | 1.246935 (Deleterious) |
| FATHMM raw prediction score | 0.76599 (Tolerated) |
| SIFT score | 0.697 (Tolerated) |
| LRT score | 0 (Deleterious) |
| MutationTaster score | 0.727 (Tolerated) |
| MutatioinAssessor score | 0.79 (Tolerated) |
| PROVEAN score | 0 (Tolerated) |
| MetaSVM score | -1.042 (Tolerated) |
| MetaLR score | 0.018 (Tolerated) |
| MCAP score | 0.003 (Tolerated) |
| FitCons score | 0.653 (Highly Significant p < 0.003 ) |
| Genomic Evolutionary Rate Profiling (GERP) score | 5.52 |
| PhyloP score based on multiple alignment of 100 vertebrates | 4.024 |
| PhastCons score based on multiple alignment of 100 vertebrates | 1 |
| SiPhy log transformed odds ratio on multiple alignment of 29 mammals | 12.02 |
| Deleterious probability by iFish2 | 0.025 (Neutral) |
| Deleterious probability by DeFine | 0.9823 (Deleterious) |
| Entrez Gene ID | 200150 (NCBI Gene) |
|---|---|
| Official Gene Symbol | PLD5 (GeneCards) |
| Number of variants in PLD5 in this database | 9 (view all the variants) |
| Full name | phospholipase D family member 5 |
| Band | 1q43 |
| Other IDs | Vega: OTTHUMG00000039867 HGNC: HGNC:26879 Ensembl: ENSG00000180287 |
| Other names | PLDC |
| Summary | None |
| Individual ID | 28714951.203 (view all the variants in this individual) |
|---|---|
| Pubmed ID | 28714951 |
| Whose mosaic mutation | Patient |
| Phenotype | 3 |
| Disease | Autism Spectrum Disorders (view all the variants in this disease) |
| OMIM ID | 209850 |
| Pubmed ID | 28714951 |
|---|---|
| Title | Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder |
| Journal | Nat Neurosci |
| Publication date | 2017.07 |
| Disease | Autism Spectrum Disorders |
| Incidence | 0.01 |
| Number of cases | cases of unknown sex: 376; |