Overview

Variant ID 29583
Entrez Gene ID 259232
Gene NALCN (GeneCards)
Location hg19 13:101890181-101890181
hg38 13:101237830-101237830
Disease Autism Spectrum Disorders (view all the variants in this disease)
Method MiSeq
Mutation(HGVS format) NC_000013.10:g.101890181 G>A (Genome Assembly: hg19)

Other information

Exon or Intron NA
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 115169878

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
Variant IDs in COSMIC (version 89) 3417325
Variant occurences in COSMIC 3(skin)|2(large_intestine)|1(endometrium)
EIGEN score 0.6319
CADD Raw score (version 1.3) 0.753402 (Deleterious)
FATHMM raw prediction score 0.96522 (Tolerated)
Deleterious probability by DeFine 0.8398 (Deleterious)
Entrez Gene ID 259232 (NCBI Gene)
Official Gene Symbol NALCN (GeneCards)
Number of variants in NALCN in this database 5 (view all the variants)
Full name sodium leak channel, non-selective
Band 13q32.3-q33.1
Other IDs Vega: OTTHUMG00000017295
OMIM: 611549
HGNC: HGNC:19082
Ensembl: ENSG00000102452
Other names IHPRF, INNFD, CanIon, IHPRF1, VGCNL1, CLIFAHDD, bA430M15.1
Summary This gene encodes a voltage-independent, nonselective cation channel which belongs to a family of voltage-gated sodium and calcium channels that regulates the resting membrane potential and excitability of neurons. This family is expressed throughout the nervous system and conducts a persistent sodium leak current that contributes to tonic neuronal excitability. The encoded protein forms a channelosome complex that includes G-protein-coupled receptors, UNC-79, UNC-80, NCA localization factor-1, and src family tyrosine kinases. Naturally occurring mutations in this gene are associated with infantile neuroaxonal dystrophy, infantile hypotonia with psychomotor retardation and characteristic facies (IHPRF) syndrome, and congenital contractures of the limbs and face with hypotonia and developmental delay (CLIFAHDD) syndrome. A knockout of the orthologous gene in mice results in paralysis with a severely disrupted respiratory rhythm, and lethality within 24 hours after birth. [provided by RefSeq, Apr 2017]

Individual #1

Individual ID 28714951.259 (view all the variants in this individual)
Pubmed ID 28714951
Whose mosaic mutation Patient  
Phenotype 3  
Disease Autism Spectrum Disorders (view all the variants in this disease)
OMIM ID 209850

Publication #1: 28714951

Pubmed ID 28714951
Title Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder
Journal Nat Neurosci
Publication date 2017.07
Disease Autism Spectrum Disorders
Incidence 0.01
Number of cases cases of unknown sex: 376;