Overview

Variant ID 409
Entrez Gene ID 860
Gene RUNX2 (GeneCards)
Location hg19 6:45479987-45479987
hg38 6:45512250-45512250
Disease Cleidocranial dysplasia (view all the variants in this disease)
Method ABI377
Mutation(HGVS format) NC_000006.11:g.45479987 C>T (Genome Assembly: hg19)

Other information

Exon or Intron Intron
Exon number 6
Exon nc 46
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA G > A
Indel insC
mRNA accession NM_001024630.3
mRNA length 1566
Reference length 171115067

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score 1.7497
CADD Raw score (version 1.3) 1.547435 (Deleterious)
FATHMM raw prediction score 0.9774 (Tolerated)
Deleterious probability by DeFine 0.9049 (Deleterious)
Entrez Gene ID 860 (NCBI Gene)
Official Gene Symbol RUNX2 (GeneCards)
Number of variants in RUNX2 in this database 5 (view all the variants)
Full name runt related transcription factor 2
Band 6p21.1
Other IDs Vega: OTTHUMG00000014774
OMIM: 600211
HGNC: HGNC:10472
Ensembl: ENSG00000124813
Other names CCD, AML3, CCD1, CLCD, OSF2, CBFA1, OSF-2, PEA2aA, PEBP2aA, CBF-alpha-1
Summary This gene is a member of the RUNX family of transcription factors and encodes a nuclear protein with an Runt DNA-binding domain. This protein is essential for osteoblastic differentiation and skeletal morphogenesis and acts as a scaffold for nucleic acids and regulatory factors involved in skeletal gene expression. The protein can bind DNA both as a monomer or, with more affinity, as a subunit of a heterodimeric complex. Two regions of potential trinucleotide repeat expansions are present in the N-terminal region of the encoded protein, and these and other mutations in this gene have been associated with the bone development disorder cleidocranial dysplasia (CCD). Transcript variants that encode different protein isoforms result from the use of alternate promoters as well as alternate splicing. [provided by RefSeq, Jul 2016]

Individual #1

Individual ID 17539909.01 (view all the variants in this individual)
Pubmed ID 17539909
Whose mosaic mutation Mother  
Phenotype 1  
Number of affected children 3 ( male: 3; )
Disease Cleidocranial dysplasia (view all the variants in this disease)
OMIM ID 119600

Publication #1: 17539909

Pubmed ID 17539909
Title The presence of germ line mosaicism in cleidocranial dysplasia
Journal Clinical Genetics
Publication date 2007.06
Disease Cleidocranial dysplasia
Number of cases Female cases: 1;