Variant ID | 410 |
---|---|
Entrez Gene ID | 860 |
Gene | RUNX2 (GeneCards) |
Location | hg19 6:45479987-45479987
hg38 6:45512250-45512250 |
Disease | Cleidocranial dysplasia (view all the variants in this disease) |
Method | ABI377 |
Mutation(HGVS format) | NC_000006.11:g.45479987 C>T (Genome Assembly: hg19) |
Exon or Intron | Intron |
---|---|
Exon number | 6 |
Exon nc | 46 |
Position in protein | NA |
Amino acid changes in protein | NA > NA |
Position in cDNA | NA |
Changes in cDNA | G > A |
Indel | insC |
mRNA accession | NM_001024630.3 |
mRNA length | 1566 |
Reference length | 171115067 |
MAF in gnomAD genome (version 2.0.1) | 0 |
---|---|
EIGEN score | 1.7497 |
CADD Raw score (version 1.3) | 1.547435 (Deleterious) |
FATHMM raw prediction score | 0.9774 (Tolerated) |
Deleterious probability by DeFine | 0.9049 (Deleterious) |
Entrez Gene ID | 860 (NCBI Gene) |
---|---|
Official Gene Symbol | RUNX2 (GeneCards) |
Number of variants in RUNX2 in this database | 5 (view all the variants) |
Full name | runt related transcription factor 2 |
Band | 6p21.1 |
Other IDs | Vega: OTTHUMG00000014774 OMIM: 600211 HGNC: HGNC:10472 Ensembl: ENSG00000124813 |
Other names | CCD, AML3, CCD1, CLCD, OSF2, CBFA1, OSF-2, PEA2aA, PEBP2aA, CBF-alpha-1 |
Summary | This gene is a member of the RUNX family of transcription factors and encodes a nuclear protein with an Runt DNA-binding domain. This protein is essential for osteoblastic differentiation and skeletal morphogenesis and acts as a scaffold for nucleic acids and regulatory factors involved in skeletal gene expression. The protein can bind DNA both as a monomer or, with more affinity, as a subunit of a heterodimeric complex. Two regions of potential trinucleotide repeat expansions are present in the N-terminal region of the encoded protein, and these and other mutations in this gene have been associated with the bone development disorder cleidocranial dysplasia (CCD). Transcript variants that encode different protein isoforms result from the use of alternate promoters as well as alternate splicing. [provided by RefSeq, Jul 2016] |
Individual ID | 17539909.01 (view all the variants in this individual) |
---|---|
Pubmed ID | 17539909 |
Whose mosaic mutation | Mother |
Phenotype | 1 |
Number of affected children | 3 ( male: 3; ) |
Disease | Cleidocranial dysplasia (view all the variants in this disease) |
OMIM ID | 119600 |
Pubmed ID | 17539909 |
---|---|
Title | The presence of germ line mosaicism in cleidocranial dysplasia |
Journal | Clinical Genetics |
Publication date | 2007.06 |
Disease | Cleidocranial dysplasia |
Number of cases | Female cases: 1; |