Overview

Variant ID 5465
Entrez Gene ID 11280
Gene SCN11A (GeneCards)
Location hg19 3:39068548-39068548
hg38 3:39027057-39027057
Disease Asymptomatic
Method HiSeq X Ten
Mutation(HGVS format) NC_000003.11:g.39068548 C>T (Genome Assembly: GRCh37)

Other information

Exon or Intron NA
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 198022430

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score -0.3349
CADD Raw score (version 1.3) -0.017237 (Deleterious)
FATHMM raw prediction score 0.07779 (Tolerated)
Deleterious probability by DeFine 0.2507 (Neutral)
Entrez Gene ID 11280 (NCBI Gene)
Official Gene Symbol SCN11A (GeneCards)
Number of variants in SCN11A in this database 76 (view all the variants)
Full name sodium voltage-gated channel alpha subunit 11
Band 3p22.2
Other IDs Vega: OTTHUMG00000048246
OMIM: 604385
HGNC: HGNC:10583
Ensembl: ENSG00000168356
Other names NaN, PN5, FEPS3, HSAN7, SNS-2, NAV1.9, SCN12A
Summary Voltage-gated sodium channels are transmembrane glycoprotein complexes composed of a large alpha subunit with 24 transmembrane domains and one or more regulatory beta subunits. They are responsible for the generation and propagation of action potentials in neurons and muscle. This gene encodes one member of the sodium channel alpha subunit gene family, and is highly expressed in nociceptive neurons of dorsal root ganglia and trigeminal ganglia. It mediates brain-derived neurotrophic factor-evoked membrane depolarization and is a major effector of peripheral inflammatory pain hypersensitivity. Mutations in this gene have been associated with hereditary sensory and autonomic neuropathy type VII and familial episodic pain syndrome-3. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2017]

Individual #1

Individual ID 29217584.13 (view all the variants in this individual)
Pubmed ID 29217584
Whose mosaic mutation Normal  
Phenotype 1  
Disease Asymptomatic
OMIM ID

Publication #1: 29217584

Pubmed ID 29217584
Title Aging and neurodegeneration are associated with increased mutations in single human neurons.
Journal Science
Publication date 2018.02
Disease Cockayne syndrome Xeroderma Pigmentosum
Number of cases Male cases: 3; Female cases: 6; cases of unknown sex: 15;