Overview

Variant ID 635
Entrez Gene ID 114548
Gene NLRP3 (GeneCards)
Location hg19 1:247587982-247587982
hg38 1:247424680-247424680
Disease Muckle Wells syndrome (view all the variants in this disease)
Method Sanger
Mutation(HGVS format) NC_000001.10:g.247587982 C>T (Genome Assembly: hg19)

Other information

Exon or Intron exon
Position in protein 411
Amino acid changes in protein L > F
Position in cDNA 1231
Changes in cDNA C > T
mRNA accession NM_001243133.1
mRNA length 4470
Reference length 249250621

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0.0067
SNP ID (dbSNP ID version 137) rs148478875
Variant IDs in COSMIC (version 89) 1317551
Variant occurences in COSMIC 1(haematopoietic_and_lymphoid_tissue)
EIGEN score 0.9066
CADD Raw score (version 1.3) 0.883322 (Deleterious)
FATHMM raw prediction score 0.96081 (Tolerated)
Deleterious probability by DeFine 0.7012 (Deleterious)
Entrez Gene ID 114548 (NCBI Gene)
Official Gene Symbol NLRP3 (GeneCards)
Number of variants in NLRP3 in this database 78 (view all the variants)
Full name NLR family pyrin domain containing 3
Band 1q44
Other IDs Vega: OTTHUMG00000040647
OMIM: 606416
HGNC: HGNC:16400
Ensembl: ENSG00000162711
Other names AII, AVP, FCU, MWS, FCAS, KEFH, CIAS1, FCAS1, NALP3, C1orf7, CLR1.1, DFNA34, PYPAF1, AGTAVPRL
Summary This gene encodes a pyrin-like protein containing a pyrin domain, a nucleotide-binding site (NBS) domain, and a leucine-rich repeat (LRR) motif. This protein interacts with the apoptosis-associated speck-like protein PYCARD/ASC, which contains a caspase recruitment domain, and is a member of the NALP3 inflammasome complex. This complex functions as an upstream activator of NF-kappaB signaling, and it plays a role in the regulation of inflammation, the immune response, and apoptosis. Mutations in this gene are associated with familial cold autoinflammatory syndrome (FCAS), Muckle-Wells syndrome (MWS), chronic infantile neurological cutaneous and articular (CINCA) syndrome, and neonatal-onset multisystem inflammatory disease (NOMID). Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. Alternative 5' UTR structures are suggested by available data; however, insufficient evidence is available to determine if all of the represented 5' UTR splice patterns are biologically valid. [provided by RefSeq, Oct 2008]

Individual #1

Individual ID 24326009.04 (view all the variants in this individual)
Pubmed ID 24326009
Whose mosaic mutation Patient  
Phenotype 3  
Disease Muckle Wells syndrome (view all the variants in this disease)
OMIM ID 191900

Publication #1: 24326009

Pubmed ID 24326009
Title Somatic NLRP3 mosaicism in Muckle-Wells syndrome. A genetic mechanism shared by different phenotypes of cryopyrin-associated periodic syndromes.
Journal Annals of the rheumatic diseases
Publication date 2015.03
Disease Muckle Wells syndrome
Population Spain;Japan