| Variant ID | 640 |
|---|---|
| Entrez Gene ID | 29072 |
| Gene | SETD2 (GeneCards) |
| Location | hg19 3:47144882-47144882
hg38 3:47103392-47103392 |
| Disease | Autism Spectrum Disorders (view all the variants in this disease) |
| Method | HiSeq 2000 |
| Mutation(HGVS format) | NC_000003.11:g.47144882 G>C (Genome Assembly: hg19) |
| Exon or Intron | NA |
|---|---|
| Position in protein | 1624 |
| Amino acid changes in protein | S > C |
| Position in cDNA | 4871 |
| Changes in cDNA | C > G |
| mRNA accession | NM_001349370.1 |
| mRNA length | 8436 |
| Reference length | 198022430 |
| MAF in gnomAD genome (version 2.0.1) | 0 |
|---|---|
| EIGEN score | 1.035 |
| CADD Raw score (version 1.3) | 6.410693 (Deleterious) |
| FATHMM raw prediction score | 0.96814 (Tolerated) |
| SIFT score | 0 (Deleterious) |
| LRT score | 0 (Deleterious) |
| MutationTaster score | 1 (Deleterious) |
| MutatioinAssessor score | 3.485 (Deleterious) |
| PROVEAN score | -4.57 (Deleterious) |
| MetaSVM score | 0.7 (Deleterious) |
| MetaLR score | 0.776 (Deleterious) |
| MCAP score | 0.177 (Deleterious) |
| FitCons score | 0.732 (Highly Significant p < 0.003 ) |
| Genomic Evolutionary Rate Profiling (GERP) score | 5.83 |
| PhyloP score based on multiple alignment of 100 vertebrates | 9.526 |
| PhastCons score based on multiple alignment of 100 vertebrates | 1 |
| SiPhy log transformed odds ratio on multiple alignment of 29 mammals | 18.299 |
| Deleterious probability by iFish2 | 0.9267 (Deleterious) |
| Deleterious probability by DeFine | 0.912 (Deleterious) |
| Entrez Gene ID | 29072 (NCBI Gene) |
|---|---|
| Official Gene Symbol | SETD2 (GeneCards) |
| Number of variants in SETD2 in this database | 33 (view all the variants) |
| Full name | SET domain containing 2 |
| Band | 3p21.31 |
| Other IDs | Vega: OTTHUMG00000133514 OMIM: 612778 HGNC: HGNC:18420 Ensembl: ENSG00000181555 |
| Other names | LLS, HYPB, SET2, HIF-1, HIP-1, KMT3A, HBP231, HSPC069, p231HBP |
| Summary | Huntington's disease (HD), a neurodegenerative disorder characterized by loss of striatal neurons, is caused by an expansion of a polyglutamine tract in the HD protein huntingtin. This gene encodes a protein belonging to a class of huntingtin interacting proteins characterized by WW motifs. This protein is a histone methyltransferase that is specific for lysine-36 of histone H3, and methylation of this residue is associated with active chromatin. This protein also contains a novel transcriptional activation domain and has been found associated with hyperphosphorylated RNA polymerase II. [provided by RefSeq, Aug 2008] |
| Individual ID | 26637798.02 (view all the variants in this individual) |
|---|---|
| Pubmed ID | 26637798 |
| Whose mosaic mutation | Male Patient |
| Phenotype | 3 |
| Disease | Autism Spectrum Disorders (view all the variants in this disease) |
| OMIM ID | 209850 |
| Pubmed ID | 26637798 |
|---|---|
| Title | Targeted DNA Sequencing from Autism Spectrum Disorder Brains Implicates Multiple Genetic Mechanisms. |
| Journal | Neuron |
| Publication date | 2015.12 |
| Disease | Autism Spectrum Disorders |
| Number of cases | Male cases: 1; Female cases: 1; |