| Variant ID | 857 |
|---|---|
| Entrez Gene ID | 29083 |
| Gene | GTPBP8 (GeneCards) |
| Location | hg19 3:112711921-112711921
hg38 3:112993074-112993074 |
| Disease | Human Skin Fibroblasts (view all the variants in this disease) |
| Method | HiSeq 2500 |
| Mutation(HGVS format) | NC_000003.11:g.112711921 G>T (Genome Assembly: hg19) |
| Exon or Intron | Exon |
|---|---|
| Position in protein | 129 |
| Amino acid changes in protein | A > S |
| Position in cDNA | NA |
| Changes in cDNA | NA > NA |
| mRNA accession | NA |
| mRNA length | NA |
| Reference length | 198022430 |
| MAF in gnomAD genome (version 2.0.1) | 0 |
|---|---|
| EIGEN score | 0.2451 |
| CADD Raw score (version 1.3) | 2.873838 (Deleterious) |
| FATHMM raw prediction score | 0.94077 (Tolerated) |
| SIFT score | 0.007 (Deleterious) |
| MutationTaster score | 0.8 (Deleterious) |
| MutatioinAssessor score | 0.725 (Tolerated) |
| PROVEAN score | -2.53 (Deleterious) |
| MetaSVM score | -1.121 (Tolerated) |
| MetaLR score | 0.048 (Tolerated) |
| MCAP score | 0.009 (Tolerated) |
| FitCons score | 0.732 (Highly Significant p < 0.003 ) |
| Genomic Evolutionary Rate Profiling (GERP) score | 4.78 |
| PhyloP score based on multiple alignment of 100 vertebrates | 5.377 |
| PhastCons score based on multiple alignment of 100 vertebrates | 1 |
| SiPhy log transformed odds ratio on multiple alignment of 29 mammals | 13.403 |
| Deleterious probability by iFish2 | 0.66 (Deleterious) |
| Deleterious probability by DeFine | 0.9144 (Deleterious) |
| Entrez Gene ID | 29083 (NCBI Gene) |
|---|---|
| Official Gene Symbol | GTPBP8 (GeneCards) |
| Number of variants in GTPBP8 in this database | 1 (view all the variants) |
| Full name | GTP binding protein 8 (putative) |
| Band | 3q13.2 |
| Other IDs | Vega: OTTHUMG00000159268 HGNC: HGNC:25007 Ensembl: ENSG00000163607 |
| Other names | HSPC135 |
| Summary | None |
| Individual ID | 27788131.01 (view all the variants in this individual) |
|---|---|
| Pubmed ID | 27788131 |
| Whose mosaic mutation | Normal |
| Phenotype | 1 |
| Disease | Human Skin Fibroblasts (view all the variants in this disease) |
| OMIM ID | 120353 |
| Pubmed ID | 27788131 |
|---|---|
| Title | The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts. |
| Journal | PLoS Genetics |
| Publication date | 2016.10 |
| Disease | Human Skin Fibroblasts |
| Population | Caucasian |
| Number of cases | Male cases: 2; |