Overview

Variant ID 8980
Entrez Gene ID 860
Gene RUNX2 (GeneCards)
Location hg19 6:45717958-45717958
hg38 6:45750221-45750221
Disease Asymptomatic
Method HiSeq X Ten
Mutation(HGVS format) NC_000006.11:g.45717958 C>G (Genome Assembly: GRCh37)

Other information

Exon or Intron NA
Position in protein NA
Amino acid changes in protein NA > NA
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 171115067

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score -0.3655
CADD Raw score (version 1.3) -0.357255 (Deleterious)
FATHMM raw prediction score 0.09064 (Tolerated)
Deleterious probability by DeFine 0.2409 (Neutral)
Entrez Gene ID 860 (NCBI Gene)
Official Gene Symbol RUNX2 (GeneCards)
Number of variants in RUNX2 in this database 5 (view all the variants)
Full name runt related transcription factor 2
Band 6p21.1
Other IDs Vega: OTTHUMG00000014774
OMIM: 600211
HGNC: HGNC:10472
Ensembl: ENSG00000124813
Other names CCD, AML3, CCD1, CLCD, OSF2, CBFA1, OSF-2, PEA2aA, PEBP2aA, CBF-alpha-1
Summary This gene is a member of the RUNX family of transcription factors and encodes a nuclear protein with an Runt DNA-binding domain. This protein is essential for osteoblastic differentiation and skeletal morphogenesis and acts as a scaffold for nucleic acids and regulatory factors involved in skeletal gene expression. The protein can bind DNA both as a monomer or, with more affinity, as a subunit of a heterodimeric complex. Two regions of potential trinucleotide repeat expansions are present in the N-terminal region of the encoded protein, and these and other mutations in this gene have been associated with the bone development disorder cleidocranial dysplasia (CCD). Transcript variants that encode different protein isoforms result from the use of alternate promoters as well as alternate splicing. [provided by RefSeq, Jul 2016]

Individual #1

Individual ID 29217584.03 (view all the variants in this individual)
Pubmed ID 29217584
Whose mosaic mutation Normal  
Phenotype 1  
Disease Asymptomatic
OMIM ID

Publication #1: 29217584

Pubmed ID 29217584
Title Aging and neurodegeneration are associated with increased mutations in single human neurons.
Journal Science
Publication date 2018.02
Disease Cockayne syndrome Xeroderma Pigmentosum
Number of cases Male cases: 3; Female cases: 6; cases of unknown sex: 15;