Overview

Variant ID 905
Entrez Gene ID 1565
Gene CYP2D6 (GeneCards)
Location hg19 22:42523977-42523977
hg38 22:42127975-42127975
Disease Human Skin Fibroblasts (view all the variants in this disease)
Method HiSeq 2500
Mutation(HGVS format) NC_000022.10:g.42523977 C>T (Genome Assembly: hg19)

Other information

Exon or Intron Exon
Position in protein 284
Amino acid changes in protein G > G
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 51304566

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
Variant IDs in COSMIC (version 89) 726955
Variant occurences in COSMIC 1(lung)
EIGEN score 1.4197
CADD Raw score (version 1.3) 1.413882 (Deleterious)
FATHMM raw prediction score 0.48443 (Tolerated)
Deleterious probability by DeFine 0.8277 (Deleterious)
Entrez Gene ID 1565 (NCBI Gene)
Official Gene Symbol CYP2D6 (GeneCards)
Number of variants in CYP2D6 in this database 1 (view all the variants)
Full name cytochrome P450 family 2 subfamily D member 6
Band 22q13.2
Other IDs Vega: OTTHUMG00000150918
OMIM: 124030
HGNC: HGNC:2625
Ensembl: ENSG00000100197
Other names CPD6, CYP2D, CYP2DL1, CYPIID6, P450C2D, P450DB1, CYP2D7AP, CYP2D7BP, CYP2D7P2, CYP2D8P2, P450-DB1
Summary This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This protein localizes to the endoplasmic reticulum and is known to metabolize as many as 25% of commonly prescribed drugs. Its substrates include antidepressants, antipsychotics, analgesics and antitussives, beta adrenergic blocking agents, antiarrythmics and antiemetics. The gene is highly polymorphic in the human population; certain alleles result in the poor metabolizer phenotype, characterized by a decreased ability to metabolize the enzyme's substrates. Some individuals with the poor metabolizer phenotype have no functional protein since they carry 2 null alleles whereas in other individuals the gene is absent. This gene can vary in copy number and individuals with the ultrarapid metabolizer phenotype can have 3 or more active copies of the gene. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2014]

Individual #1

Individual ID 27788131.02 (view all the variants in this individual)
Pubmed ID 27788131
Whose mosaic mutation Normal  
Phenotype 1  
Disease Human Skin Fibroblasts (view all the variants in this disease)
OMIM ID 120353

Publication #1: 27788131

Pubmed ID 27788131
Title The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts.
Journal PLoS Genetics
Publication date 2016.10
Disease Human Skin Fibroblasts
Population Caucasian
Number of cases Male cases: 2;