| Variant ID | 947 |
|---|---|
| Entrez Gene ID | 162394 |
| Gene | SLFN5 (GeneCards) |
| Location | hg19 17:33591765-33591765
hg38 17:35264746-35264746 |
| Disease | Human Skin Fibroblasts (view all the variants in this disease) |
| Method | HiSeq 2500 |
| Mutation(HGVS format) | NC_000017.10:g.33591765 C>A (Genome Assembly: hg19) |
| Exon or Intron | Exon |
|---|---|
| Position in protein | 568 |
| Amino acid changes in protein | L > I |
| Position in cDNA | NA |
| Changes in cDNA | NA > NA |
| mRNA accession | NA |
| mRNA length | NA |
| Reference length | 81195210 |
| MAF in gnomAD genome (version 2.0.1) | 0 |
|---|---|
| EIGEN score | -1.0038 |
| CADD Raw score (version 1.3) | 0.929657 (Deleterious) |
| FATHMM raw prediction score | 0.03161 (Tolerated) |
| SIFT score | 0.044 (Deleterious) |
| LRT score | 0.241 (Tolerated) |
| MutationTaster score | 1 (Tolerated) |
| MutatioinAssessor score | 1.66 (Tolerated) |
| PROVEAN score | -1.59 (Tolerated) |
| MetaSVM score | -0.96 (Tolerated) |
| MetaLR score | 0.01 (Tolerated) |
| MCAP score | 0.002 (Tolerated) |
| FitCons score | 0.707 (Highly Significant p < 0.003 ) |
| Genomic Evolutionary Rate Profiling (GERP) score | 1.17 |
| PhyloP score based on multiple alignment of 100 vertebrates | 0.599 |
| PhastCons score based on multiple alignment of 100 vertebrates | 0.017 |
| SiPhy log transformed odds ratio on multiple alignment of 29 mammals | 3.897 |
| Deleterious probability by iFish2 | 0.0181 (Neutral) |
| Deleterious probability by DeFine | 0.3824 (Neutral) |
| Entrez Gene ID | 162394 (NCBI Gene) |
|---|---|
| Official Gene Symbol | SLFN5 (GeneCards) |
| Number of variants in SLFN5 in this database | 2 (view all the variants) |
| Full name | schlafen family member 5 |
| Band | 17q12 |
| Other IDs | Vega: OTTHUMG00000179858 OMIM: 614952 HGNC: HGNC:28286 Ensembl: ENSG00000166750 |
| Other names | None |
| Summary | None |
| Individual ID | 27788131.02 (view all the variants in this individual) |
|---|---|
| Pubmed ID | 27788131 |
| Whose mosaic mutation | Normal |
| Phenotype | 1 |
| Disease | Human Skin Fibroblasts (view all the variants in this disease) |
| OMIM ID | 120353 |
| Pubmed ID | 27788131 |
|---|---|
| Title | The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts. |
| Journal | PLoS Genetics |
| Publication date | 2016.10 |
| Disease | Human Skin Fibroblasts |
| Population | Caucasian |
| Number of cases | Male cases: 2; |