Overview

Variant ID 992
Entrez Gene ID 4638
Gene MYLK (GeneCards)
Location hg19 3:123348350-123348350
hg38 3:123629503-123629503
Disease Human Skin Fibroblasts (view all the variants in this disease)
Method HiSeq 2500
Mutation(HGVS format) NC_000003.11:g.123348350 G>A (Genome Assembly: hg19)

Other information

Exon or Intron Exon
Position in protein 1695
Amino acid changes in protein F > F
Position in cDNA NA
Changes in cDNA NA > NA
mRNA accession NA
mRNA length NA
Reference length 198022430

Annotations and predictions

MAF in gnomAD genome (version 2.0.1) 0
EIGEN score 1.2138
CADD Raw score (version 1.3) 1.816858 (Deleterious)
FATHMM raw prediction score 0.92013 (Tolerated)
Deleterious probability by DeFine 0.8701 (Deleterious)
Entrez Gene ID 4638 (NCBI Gene)
Official Gene Symbol MYLK (GeneCards)
Number of variants in MYLK in this database 2 (view all the variants)
Full name myosin light chain kinase
Band 3q21.1
Other IDs Vega: OTTHUMG00000141304
OMIM: 600922
HGNC: HGNC:7590
Ensembl: ENSG00000065534
Other names KRP, AAT7, MLCK, MLCK1, MYLK1, smMLCK, MLCK108, MLCK210, MSTP083
Summary This gene, a muscle member of the immunoglobulin gene superfamily, encodes myosin light chain kinase which is a calcium/calmodulin dependent enzyme. This kinase phosphorylates myosin regulatory light chains to facilitate myosin interaction with actin filaments to produce contractile activity. This gene encodes both smooth muscle and nonmuscle isoforms. In addition, using a separate promoter in an intron in the 3' region, it encodes telokin, a small protein identical in sequence to the C-terminus of myosin light chain kinase, that is independently expressed in smooth muscle and functions to stabilize unphosphorylated myosin filaments. A pseudogene is located on the p arm of chromosome 3. Four transcript variants that produce four isoforms of the calcium/calmodulin dependent enzyme have been identified as well as two transcripts that produce two isoforms of telokin. Additional variants have been identified but lack full length transcripts. [provided by RefSeq, Jul 2008]

Individual #1

Individual ID 27788131.02 (view all the variants in this individual)
Pubmed ID 27788131
Whose mosaic mutation Normal  
Phenotype 1  
Disease Human Skin Fibroblasts (view all the variants in this disease)
OMIM ID 120353

Publication #1: 27788131

Pubmed ID 27788131
Title The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts.
Journal PLoS Genetics
Publication date 2016.10
Disease Human Skin Fibroblasts
Population Caucasian
Number of cases Male cases: 2;