AutismKB 2.0

Annotation Details for CLN3


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Basic Information Top
Gene Symbol:CLN3 ( BTS,JNCL,MGC102840 )
Gene Full Name: ceroid-lipofuscinosis, neuronal 3
Band: 16p12.1
Quick LinksEntrez ID:1201; OMIM: 607042; Uniprot ID:CLN3_HUMAN; ENSEMBL ID: ENSG00000188603; HGNC ID: 2074
Relate to Another Database: SFARIGene; denovo-db
Gene Ontology Top
GO ID Evidence Qualifier GO_term References
GO:0000139IDA-Golgi membrane9949212
GO:0005634IDA-nucleus10191116
GO:0005737IDA-cytoplasm10191116
GO:0005739TAS-mitochondrion8980123
GO:0005764IDA-lysosome10924275
GO:0005765IDA-lysosomal membrane9384607
GO:0005769IDA-early endosome15240864
GO:0005770IDA-late endosome22261744
GO:0005770ISS-late endosome-
GO:0005776ISS-autophagosome-
GO:0005783IDA-endoplasmic reticulum10191111
GO:0005794IDA-Golgi apparatus15240864
GO:0005795IDA-Golgi stack15240864
GO:0005802IDA-trans-Golgi network15240864
GO:0005886IDA-plasma membrane10191116
GO:0005901IDA-caveola15240864
GO:0008021IDA-synaptic vesicle10332042
GO:0016021IDA-integral component of membrane10191112
GO:0030176IDA-integral component of endoplasmic reticulum membrane12706816
GO:0043005IDA-neuron projection10332042
GO:0045121IDA-membrane raft15240864
GO ID Evidence Qualifier GO_term References
GO:0005515IPI-protein binding12134079
GO:0051082TAS-unfolded protein binding8980123
GO ID Evidence Qualifier GO_term References
GO:0001508ISS-action potential-
GO:0001575IMP-globoside metabolic process15240864
GO:0006520ISS-cellular amino acid metabolic process-
GO:0006672IDA-ceramide metabolic process15240864
GO:0006678IMP-glucosylceramide metabolic process15240864
GO:0006681IMP-galactosylceramide metabolic process15240864
GO:0006684IMP-sphingomyelin metabolic process15240864
GO:0006898IMP-receptor-mediated endocytosis15471887
GO:0007040ISS-lysosome organization-
GO:0007042IMP-lysosomal lumen acidification11722572
GO:0008306ISS-associative learning-
GO:0015809IDA-arginine transport16251196
GO:0016236NAS-macroautophagy9949212
GO:0016485ISS-protein processing-
GO:0030163NAS-protein catabolic process10740217
GO:0035235ISS-ionotropic glutamate receptor signaling pathway-
GO:0035752IDA-lysosomal lumen pH elevation10924275
GO:0042133ISS-neurotransmitter metabolic process-
GO:0042987IDA-amyloid precursor protein catabolic process10924275
GO:0043066IMP-negative regulation of apoptotic process15240864
GO:0043086ISS-negative regulation of catalytic activity-
GO:0043524ISS-negative regulation of neuron apoptotic process-
GO:0045861ISS-negative regulation of proteolysis-
GO:0047496IMP-vesicle transport along microtubule22261744
GO:0050885ISS-neuromuscular process controlling balance-
GO:0051480ISS-regulation of cytosolic calcium ion concentration-
GO:0061024ISS-membrane organization-
GO:0097352ISS-autophagosome maturation-
Protein-Protein Interaction Top
Gene Symbol Interactant Interaction ID References Description
CLN3AUP110761220562859 Affinity Capture-MS
CLN3AUP110703120562859 Affinity Capture-MS
SBDSCLN311930720015955 Two-hybrid
SBDSCLN310761220015955 Two-hybrid
SIGMAR1CLN311556920562859 Affinity Capture-MS
SIGMAR1CLN310761220562859 Affinity Capture-MS
ATG7CLN311578720562859 Affinity Capture-MS
ATG7CLN310761220562859 Affinity Capture-MS
AFG3L2CLN311613920562859 Affinity Capture-MS
AFG3L2CLN310761220562859 Affinity Capture-MS
CKAP4CLN311616720562859 Affinity Capture-MS
CKAP4CLN310761220562859 Affinity Capture-MS
GCN1L1CLN310761220562859 Affinity Capture-MS
GCN1L1CLN311618120562859 Affinity Capture-MS
IMMTCLN311618520562859 Affinity Capture-MS
IMMTCLN310761220562859 Affinity Capture-MS
ILVBLCLN310761220562859 Affinity Capture-MS
ILVBLCLN311619020562859 Affinity Capture-MS
DDX20CLN311638720562859 Affinity Capture-MS
DDX20CLN310761220562859 Affinity Capture-MS
XPOTCLN310761220562859 Affinity Capture-MS
XPOTCLN311642020562859 Affinity Capture-MS
SFXN4CLN312564520562859 Affinity Capture-MS
SFXN4CLN310761220562859 Affinity Capture-MS
COX15CLN310774720562859 Affinity Capture-MS
COX15CLN310761220562859 Affinity Capture-MS
CPT1ACLN310776520562859 Affinity Capture-MS
CPT1ACLN310761220562859 Affinity Capture-MS
SLC25A10CLN310761220562859 Affinity Capture-MS
SLC25A10CLN310785020562859 Affinity Capture-MS
CYC1CLN310761220562859 Affinity Capture-MS
CYC1CLN310791720562859 Affinity Capture-MS
DDOSTCLN310801720562859 Affinity Capture-MS
DDOSTCLN310761220562859 Affinity Capture-MS
NUP205CLN310761220562859 Affinity Capture-MS
NUP205CLN311677720562859 Affinity Capture-MS
GANABCLN311680220562859 Affinity Capture-MS
GANABCLN310761220562859 Affinity Capture-MS
KIAA0368CLN311696620562859 Affinity Capture-MS
KIAA0368CLN310761220562859 Affinity Capture-MS
IRAK1CLN310986320562859 Affinity Capture-MS
IRAK1CLN310761220562859 Affinity Capture-MS
GEMIN4CLN311910220562859 Affinity Capture-MS
GEMIN4CLN310761220562859 Affinity Capture-MS
HSD17B12CLN311932820562859 Affinity Capture-MS
HSD17B12CLN310761220562859 Affinity Capture-MS
PHBCLN311126420562859 Affinity Capture-MS
PHBCLN310761220562859 Affinity Capture-MS
SEC61A2CLN310761220562859 Affinity Capture-MS
SEC61A2CLN312047520562859 Affinity Capture-MS
RIF1CLN310761220562859 Affinity Capture-MS
RIF1CLN312048220562859 Affinity Capture-MS
FANCICLN312051120562859 Affinity Capture-MS
FANCICLN310761220562859 Affinity Capture-MS
CAND1CLN312093720562859 Affinity Capture-MS
CAND1CLN310761220562859 Affinity Capture-MS
UNC45ACLN312098620562859 Affinity Capture-MS
UNC45ACLN310761220562859 Affinity Capture-MS
PRKDCCLN311157720562859 Affinity Capture-MS
PRKDCCLN310761220562859 Affinity Capture-MS
CCDC47CLN312131820562859 Affinity Capture-MS
CCDC47CLN310761220562859 Affinity Capture-MS
ESYT2CLN310761220562859 Affinity Capture-MS
ESYT2CLN312155620562859 Affinity Capture-MS
ABCD3CLN310761220562859 Affinity Capture-MS
ABCD3CLN311178320562859 Affinity Capture-MS
RPN2CLN311210020562859 Affinity Capture-MS
RPN2CLN310761220562859 Affinity Capture-MS
TMPOCLN310761220562859 Affinity Capture-MS
TMPOCLN311296720562859 Affinity Capture-MS
VDAC2CLN310761220562859 Affinity Capture-MS
VDAC2CLN311326020562859 Affinity Capture-MS
XPO1CLN310761220562859 Affinity Capture-MS
XPO1CLN311334820562859 Affinity Capture-MS
SLC25A22CLN312286220562859 Affinity Capture-MS
SLC25A22CLN310761220562859 Affinity Capture-MS
SLC25A11CLN311399020562859 Affinity Capture-MS
SLC25A11CLN310761220562859 Affinity Capture-MS
TRIP13CLN311473020562859 Affinity Capture-MS
TRIP13CLN310761220562859 Affinity Capture-MS
NPEPPSCLN311489720562859 Affinity Capture-MS
NPEPPSCLN310761220562859 Affinity Capture-MS
NUP93CLN310761220562859 Affinity Capture-MS
NUP93CLN311504120562859 Affinity Capture-MS
TELO2CLN310761220562859 Affinity Capture-MS
TELO2CLN311522320562859 Affinity Capture-MS
No data
No data
AlzGene, PDGene and SZGene Top
Animal Model Top
  • MGI ID: MGI:107537
  • Data Attributes: MGI curated and HomoloGene calculated
No data