AutismKB 2.0

Annotation Details for DNMT3A


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Basic Information Top
Gene Symbol:DNMT3A ( DNMT3A2,M.HsaIIIA )
Gene Full Name: DNA (cytosine-5-)-methyltransferase 3 alpha
Band: 2p23.3
Quick LinksEntrez ID:1788; OMIM: 602769; Uniprot ID:DNM3A_HUMAN; ENSEMBL ID: ENSG00000119772; HGNC ID: 2978
Relate to Another Database: SFARIGene; denovo-db
Gene Ontology Top
GO ID Evidence Qualifier GO_term References
GO:0000775IEA-chromosome, centromeric region-
GO:0000791IDA-euchromatin12138111
GO:0001741IEA-XY body-
GO:0005634IDA-nucleus12138111
GO:0005654IDA-nucleoplasm-
GO:0005654TAS-nucleoplasm-
GO:0005720IEA-nuclear heterochromatin-
GO:0005737IDA-cytoplasm12138111
GO:0016363IDA-nuclear matrix12138111
GO ID Evidence Qualifier GO_term References
GO:0003677IDA-DNA binding12138111
GO:0003682IEA-chromatin binding-
GO:0003886IDA-DNA (cytosine-5-)-methyltransferase activity12138111
GO:0005515IPI-protein binding16357870
GO:0009008TAS-DNA-methyltransferase activity-
GO:0042802IPI-identical protein binding24656771
GO:0046872IEA-metal ion binding-
GO ID Evidence Qualifier GO_term References
GO:0000122IEA-negative regulation of transcription from RNA polymerase II promoter-
GO:0000278IEA-mitotic cell cycle-
GO:0006306IDA-DNA methylation12138111
GO:0006346IEA-methylation-dependent chromatin silencing-
GO:0006349TAS-regulation of gene expression by genetic imprinting12138111
GO:0007283IEA-spermatogenesis-
GO:0007568IEA-aging-
GO:0009636IEA-response to toxic substance-
GO:0010212IEA-response to ionizing radiation-
GO:0010288IEA-response to lead ion-
GO:0010942IEA-positive regulation of cell death-
GO:0030182IEA-neuron differentiation-
GO:0032355IEA-response to estradiol-
GO:0033189IEA-response to vitamin A-
GO:0042220IEA-response to cocaine-
GO:0042493IEA-response to drug-
GO:0043045IEA-DNA methylation involved in embryo development-
GO:0043046IEA-DNA methylation involved in gamete generation-
GO:0045814TAS-negative regulation of gene expression, epigenetic-
GO:0071230IEA-cellular response to amino acid stimulus-
GO:0071361IEA-cellular response to ethanol-
GO:0071456IEA-cellular response to hypoxia-
GO:0090116IEA-C-5 methylation of cytosine-
GO:0097284IEA-hepatocyte apoptotic process-
Protein-Protein Interaction Top
Gene Symbol Interactant Interaction ID References Description
DNMT3ADNMT110812312145218 Affinity Capture-Western; Reconstituted Complex
DNMT3ADNMT110812512145218 Affinity Capture-Western; Reconstituted Complex
ZNF238DNMT3A11573511350943 Affinity Capture-Western; Reconstituted Complex
ZNF238DNMT3A10812511350943 Affinity Capture-Western; Reconstituted Complex
HDAC1DNMT3A10931511350943 Affinity Capture-Western; Reconstituted Complex
HDAC1DNMT3A10812511350943 Affinity Capture-Western; Reconstituted Complex
RB1DNMT3A11186011350943 Reconstituted Complex
RB1DNMT3A10812511350943 Reconstituted Complex
DNMT3LDNMT3A11898411934864 17687327 Affinity Capture-Western; Reconstituted Complex
DNMT3LDNMT3A10812511934864 17687327 Affinity Capture-Western; Reconstituted Complex
DNMT3BDNMT3A10812612145218 12867029 14752048 Affinity Capture-Western; Reconstituted Complex
DNMT3BDNMT3A10812512145218 12867029 14752048 Affinity Capture-Western; Reconstituted Complex
SUV39H1DNMT3A10812512711675 Affinity Capture-Western; Reconstituted Complex
SUV39H1DNMT3A11270612711675 Affinity Capture-Western; Reconstituted Complex
CBX1DNMT3A10812512711675 Reconstituted Complex
CBX1DNMT3A11615112711675 Reconstituted Complex
CBX5DNMT3A11703012867029 Affinity Capture-Western
CBX5DNMT3A10812512867029 Affinity Capture-Western
UBE2IDNMT3A11317714752048 Affinity Capture-Western; Reconstituted Complex; Two-hybrid
UBE2IDNMT3A10812514752048 Affinity Capture-Western; Reconstituted Complex; Two-hybrid
PIAS1DNMT3A11412414752048 Affinity Capture-Western; Reconstituted Complex; Two-hybrid
PIAS1DNMT3A10812514752048 Affinity Capture-Western; Reconstituted Complex; Two-hybrid
PIAS2DNMT3A11452314752048 Affinity Capture-Western; Reconstituted Complex; Two-hybrid
PIAS2DNMT3A10812514752048 Affinity Capture-Western; Reconstituted Complex; Two-hybrid
ZBTB17DNMT3A11350315616584 Affinity Capture-Western
ZBTB17DNMT3A10812515616584 Affinity Capture-Western
MYCDNMT3A11069415616584 Affinity Capture-Western; Reconstituted Complex
MYCDNMT3A10812515616584 Affinity Capture-Western; Reconstituted Complex
RPS8DNMT3A11211615616584 Reconstituted Complex
RPS8DNMT3A10812515616584 Reconstituted Complex
SPI1DNMT3A10812516331260 Affinity Capture-Western; Reconstituted Complex
SPI1DNMT3A11256616331260 Affinity Capture-Western; Reconstituted Complex
EEDDNMT3A11426516357870 Affinity Capture-Western; Co-localization
EEDDNMT3A10812516357870 Affinity Capture-Western; Co-localization
EZH2DNMT3A10812516357870 Affinity Capture-Western; Reconstituted Complex
EZH2DNMT3A10844616357870 Affinity Capture-Western; Reconstituted Complex
SETDB1DNMT3A11520216682412 Affinity Capture-Western
SETDB1DNMT3A10812516682412 Affinity Capture-Western
CBX4DNMT3A11410517439403 Affinity Capture-Western; Reconstituted Complex
CBX4DNMT3A10812517439403 Affinity Capture-Western; Reconstituted Complex
PRMT5DNMT3A10812519234465 Reconstituted Complex
PRMT5DNMT3A11568819234465 Reconstituted Complex
UHRF1DNMT3A11889319798101 Affinity Capture-Western
UHRF1DNMT3A10812519798101 Affinity Capture-Western
HIST1H3ADNMT3A11394619834512 Reconstituted Complex
HIST1H3ADNMT3A10812519834512 Reconstituted Complex
HIST1H3EDNMT3A11394920223770 Far Western; Reconstituted Complex
HIST1H3EDNMT3A10812520223770 Far Western; Reconstituted Complex
Gene Symbol Interactant Interaction ID References Description
RARBDNMT3A21798715688037 DNMT3A interacts with RARB (RAR-beta-2) gene promoter sequences.
No data
AlzGene, PDGene and SZGene Top
Animal Model Top
  • MGI ID: MGI:1261827
  • Data Attributes: MGI curated and HomoloGene calculated
No data
No data

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018