AutismKB 2.0

Annotation Details for UPF2


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:UPF2 ( DKFZp434D222,HUPF2,KIAA1408,MGC138834,MGC138835,RENT2,smg-3 )
Gene Full Name: UPF2 regulator of nonsense transcripts homolog (yeast)
Band: 10p14
Quick LinksEntrez ID:26019; OMIM: 605529; Uniprot ID:RENT2_HUMAN; ENSEMBL ID: ENSG00000151461; HGNC ID: 17854
Relate to Another Database: SFARIGene; denovo-db
Gene Ontology Top
GO ID Evidence Qualifier GO_term References
GO:0000932IDA-P-body-
GO:0005634IDA-nucleus14636577
GO:0005737IDA-cytoplasm14636577
GO:0005829IDA-cytosol-
GO:0005829TAS-cytosol-
GO:0005844IBA-polysome-
GO:0035145IDA-exon-exon junction complex16601204
GO:0048471IEA-perinuclear region of cytoplasm-
GO ID Evidence Qualifier GO_term References
GO:0003723IEA-RNA binding-
GO:0005515IPI-protein binding11163187
GO:0042162IDA-telomeric DNA binding17916692
GO ID Evidence Qualifier GO_term References
GO:0000184IMP-nuclear-transcribed mRNA catabolic process, nonsense-mediated decay18369367
GO:0000184TAS-nuclear-transcribed mRNA catabolic process, nonsense-mediated decay16488880
GO:0001889IEA-liver development-
GO:0006406TAS-mRNA export from nucleus16488880
GO:0031100IEA-animal organ regeneration-
Protein-Protein Interaction Top
Gene Symbol Interactant Interaction ID References Description
UPF2EIF4A111749011073994 Two-hybrid
UPF2EIF4A110828911073994 Two-hybrid
UPF2MAP1A11030315231747 Two-hybrid
UPF2MAP1A11749015231747 Two-hybrid
UPF2PARN11110714527413 Affinity Capture-Western
UPF2PARN11749014527413 Affinity Capture-Western
UPF2EXOSC1011140314527413 Affinity Capture-Western
UPF2EXOSC1011749014527413 Affinity Capture-Western
UPF2POLD111142016488880 Affinity Capture-Western
UPF2POLD111749016488880 Affinity Capture-Western
UPF2UPF111190811073994 11163187 11544179 12723973 14527413 16086026 16488880 Affinity Capture-MS; Affinity Capture-Western
UPF2UPF111749011073994 11163187 11544179 12723973 14527413 16086026 16488880 Affinity Capture-MS; Affinity Capture-Western
UPF2RPS1511212315231747 Two-hybrid
UPF2RPS1511749015231747 Two-hybrid
UPF2RPS2511214415231747 Two-hybrid
UPF2RPS2511749015231747 Two-hybrid
UPF2XRN211648315231747 Two-hybrid
UPF2XRN211749015231747 Two-hybrid
UPF2SMG111668711544179 Affinity Capture-Western
UPF2SMG111749011544179 Affinity Capture-Western
UPF2EXOSC211749014527413 Affinity Capture-Western
UPF2EXOSC211697714527413 Affinity Capture-Western
UPF3AUPF211749011163187 14527413 Affinity Capture-Western
UPF3AUPF212239711163187 14527413 Affinity Capture-Western
UPF3BUPF211749011163187 12417715 14527413 15231747 Affinity Capture-Western; Two-hybrid
UPF3BUPF212239611163187 12417715 14527413 15231747 Affinity Capture-Western; Two-hybrid
DCP2UPF211749014527413 Affinity Capture-Western
DCP2UPF212794414527413 Affinity Capture-Western
UPF2UPF211749014527413 Affinity Capture-Western
XRN1UPF211749014527413 Affinity Capture-Western
XRN1UPF211997014527413 Affinity Capture-Western
EXOSC4UPF211749014527413 Affinity Capture-Western
EXOSC4UPF212000714527413 Affinity Capture-Western
LSM1UPF211749015231747 Two-hybrid
LSM1UPF211810415231747 Two-hybrid
No data
No data
AlzGene, PDGene and SZGene Top
Animal Model Top
  • MGI ID: MGI:2449307
  • Data Attributes: MGI curated and HomoloGene calculated
SELECT * FROM lijr_20110218_zfin_genotype_phenotype WHERE ZFIN_Gene_ID='ZDB-GENE-090715-1'