AutismKB 2.0

Annotation Details for YBX1


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Basic Information Top
Gene Symbol:YBX1 ( BP-8,CSDA2,CSDB,DBPB,MDR-NF1,MGC104858,MGC110976,MGC117250,NSEP-1,NSEP1,YB-1,YB1 )
Gene Full Name: Y box binding protein 1
Band: 1p34.2
Quick LinksEntrez ID:4904; OMIM: 154030; Uniprot ID:YBOX1_HUMAN; ENSEMBL ID: ENSG00000065978; HGNC ID: 8014
Relate to Another Database: SFARIGene; denovo-db
Gene Ontology Top
GO ID Evidence Qualifier GO_term References
GO:0005634TAS-nucleus3174636
GO:0005654TAS-nucleoplasm-
GO:0005689IDA-U12-type spliceosomal complex15146077
GO:0005737IDA-cytoplasm24965446
GO:0005829IDA-cytosol-
GO:0010494IDA-cytoplasmic stress granule18335541
GO:0030529IDA-intracellular ribonucleoprotein complex17289661
GO:0031965IDA-nuclear membrane-
GO:0043231IDA-intracellular membrane-bounded organelle-
GO:0070062IDA-extracellular exosome20458337
GO:0070937IDA-CRD-mediated mRNA stability complex19029303
GO:0071204ISS-histone pre-mRNA 3'end processing complex-
GO ID Evidence Qualifier GO_term References
GO:0000978IDA-RNA polymerase II core promoter proximal region sequence-specific DNA binding18809583
GO:0001077IDA-transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding18809583
GO:0003677IDA-DNA binding18809583
GO:0003677TAS-DNA binding2977358
GO:0003682IEA-chromatin binding-
GO:0003690TAS-double-stranded DNA binding1738588
GO:0003697IEA-single-stranded DNA binding-
GO:0003700TAS-transcription factor activity, sequence-specific DNA binding3174636
GO:0003723IDA-RNA binding19561594
GO:0005515IPI-protein binding12674497
GO:0051020IPI-GTPase binding24337748
GO ID Evidence Qualifier GO_term References
GO:0000122IEA-negative regulation of transcription from RNA polymerase II promoter-
GO:0000398TAS-mRNA splicing, via spliceosome-
GO:0001701IEA-in utero embryonic development-
GO:0006355IDA-regulation of transcription, DNA-templated18809583
GO:0006366TAS-transcription from RNA polymerase II promoter3174636
GO:0045944IDA-positive regulation of transcription from RNA polymerase II promoter18809583
GO:0051154IEA-negative regulation of striated muscle cell differentiation-
GO:0051781IEA-positive regulation of cell division-
GO:0070934IMP-CRD-mediated mRNA stabilization19029303
GO:1903608IMP-protein localization to cytoplasmic stress granule24965446
Protein-Protein Interaction Top
Gene Symbol Interactant Interaction ID References Description
YBX1APBB110681916055720 Affinity Capture-MS
YBX1APBB111095916055720 Affinity Capture-MS
YBX1CDK910745917643375 Affinity Capture-MS
YBX1CDK911095917643375 Affinity Capture-MS
YBX1FUS10879712168660 Affinity Capture-Western
YBX1FUS11095912168660 Affinity Capture-Western
YBX1HIST1H1C10926118258596 Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex
YBX1HIST1H1C11095918258596 Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex
YBX1IREB210986612192037 Affinity Capture-Western; Reconstituted Complex
YBX1IREB211095912192037 Affinity Capture-Western; Reconstituted Complex
YBX1MECP211036816251272 Affinity Capture-Western
YBX1MECP211095916251272 Affinity Capture-Western
TFAP2AYBX11128789830047 Reconstituted Complex
TFAP2AYBX11109599830047 Reconstituted Complex
PCNAYBX11111429927044 Affinity Capture-Western; Reconstituted Complex
PCNAYBX11109599927044 Affinity Capture-Western; Reconstituted Complex
CTCFYBX111590610906122 Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex
CTCFYBX111095910906122 Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex
TP53YBX111301011175333 15136035 Affinity Capture-Western; Reconstituted Complex
TP53YBX111095911175333 15136035 Affinity Capture-Western; Reconstituted Complex
SRSF9YBX111423112604611 Affinity Capture-Western; Two-hybrid
SRSF9YBX111095912604611 Affinity Capture-Western; Two-hybrid
ANKRD2YBX111766915136035 Affinity Capture-Western; Reconstituted Complex
ANKRD2YBX111095915136035 Affinity Capture-Western; Reconstituted Complex
RNU12-2PYBX111787215146077 Affinity Capture-MS
RNU12-2PYBX111095915146077 Affinity Capture-MS
RNU11YBX111787315146077 Affinity Capture-MS
RNU11YBX111095915146077 Affinity Capture-MS
PRPF40AYBX111095916055720 Affinity Capture-MS
PRPF40AYBX112079216055720 Affinity Capture-MS
SRRM2YBX111707116159877 Affinity Capture-MS
SRRM2YBX111095916159877 Affinity Capture-MS
HABP4YBX111658716455055 Two-hybrid
HABP4YBX111095916455055 Two-hybrid
KHDRBS2YBX112843617643375 Affinity Capture-MS
KHDRBS2YBX111095917643375 Affinity Capture-MS
MEPCEYBX112112217643375 Affinity Capture-MS
MEPCEYBX111095917643375 Affinity Capture-MS
RPAP2YBX112295917643375 Affinity Capture-MS
RPAP2YBX111095917643375 Affinity Capture-MS
RBBP6YBX111186518851979 Affinity Capture-Western; Biochemical Activity; Reconstituted Complex; Two-hybrid
RBBP6YBX111095918851979 Affinity Capture-Western; Biochemical Activity; Reconstituted Complex; Two-hybrid
GIGYF2YBX111752020696395 Affinity Capture-MS
GIGYF2YBX111095920696395 Affinity Capture-MS
No data
No data
AlzGene, PDGene and SZGene Top
Animal Model Top
  • MGI ID: MGI:99146
  • Data Attributes: MGI curated and HomoloGene calculated
SELECT * FROM lijr_20110218_zfin_genotype_phenotype WHERE ZFIN_Gene_ID='ZDB-GENE-000629-3'