AutismKB 2.0

Annotation Details for XRN1


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Basic Information Top
Gene Symbol:XRN1 ( DKFZp434P0721,DKFZp686B22225,DKFZp686F19113,FLJ41903,SEP1 )
Gene Full Name: 5'-3' exoribonuclease 1
Band: 3q23
Quick LinksEntrez ID:54464; OMIM: 607994; Uniprot ID:XRN1_HUMAN; ENSEMBL ID: ENSG00000114127; HGNC ID: 30654
Relate to Another Database: SFARIGene; denovo-db
Gene Ontology Top
GO ID Evidence Qualifier GO_term References
GO:0000932IEA-P-body-
GO:0005634IEA-nucleus-
GO:0005829IDA-cytosol-
GO:0005829TAS-cytosol-
GO:0005886IDA-plasma membrane-
GO:0016020IDA-membrane19946888
GO:0030425IEA-dendrite-
GO:0043025IEA-neuronal cell body-
GO:0045202IEA-synapse-
GO ID Evidence Qualifier GO_term References
GO:0002151ISS-G-quadruplex RNA binding-
GO:0003723IDA-RNA binding22658674
GO:0004534IMP-5'-3' exoribonuclease activity26950371
GO:0004534ISS-5'-3' exoribonuclease activity-
GO:0005515IPI-protein binding15687258
GO:0051880ISS-G-quadruplex DNA binding-
GO:0070034IC-telomerase RNA binding26950371
GO ID Evidence Qualifier GO_term References
GO:0000956IMP-nuclear-transcribed mRNA catabolic process17545563
GO:0016075IMP-rRNA catabolic process20368444
GO:0017148IEA-negative regulation of translation-
GO:0032211IC-negative regulation of telomere maintenance via telomerase26950371
GO:0033574IEA-response to testosterone-
GO:0043488TAS-regulation of mRNA stability-
GO:0071028IMP-nuclear mRNA surveillance17545563
GO:0071044IMP-histone mRNA catabolic process18172165
GO:0071409IEA-cellular response to cycloheximide-
GO:0090503ISS-RNA phosphodiester bond hydrolysis, exonucleolytic-
GO:1905795IEA-cellular response to puromycin-
Protein-Protein Interaction Top
Gene Symbol Interactant Interaction ID References Description
XRN1ALDOA10672815231747 Two-hybrid
XRN1ALDOA11997015231747 Two-hybrid
XRN1CHD411997015231747 Two-hybrid
XRN1CHD410753315231747 Two-hybrid
XRN1MLH111043817148452 Affinity Capture-MS
XRN1MLH111997017148452 Affinity Capture-MS
XRN1UPF111997014527413 Affinity Capture-Western
XRN1UPF111190814527413 Affinity Capture-Western
XRN1SMARCD211248715231747 Two-hybrid
XRN1SMARCD211997015231747 Two-hybrid
XRN1BAT311997015231747 Two-hybrid
XRN1BAT311364715231747 Two-hybrid
XRN1PABPC411429615231747 Two-hybrid
XRN1PABPC411997015231747 Two-hybrid
XRN1AP1G211997015231747 Two-hybrid
XRN1AP1G211442015231747 Two-hybrid
XRN1CCT511660315231747 Two-hybrid
XRN1CCT511997015231747 Two-hybrid
XRN1LSM411733615231747 Two-hybrid
XRN1LSM411997015231747 Two-hybrid
XRN1UPF211749014527413 Affinity Capture-Western
XRN1UPF211997014527413 Affinity Capture-Western
UPF3AXRN112239714527413 Affinity Capture-Western
UPF3AXRN111997014527413 Affinity Capture-Western
No data
No data
AlzGene, PDGene and SZGene Top
Animal Model Top
  • MGI ID: MGI:891964
  • Data Attributes: HomoloGene calculated
SELECT * FROM lijr_20110218_zfin_genotype_phenotype WHERE ZFIN_Gene_ID='ZDB-GENE-040426-1203'