AutismKB 2.0

Annotation Details for UPF3B


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Basic Information Top
Gene Symbol:UPF3B ( HUPF3B,MRXS14,RENT3B,UPF3X )
Gene Full Name: UPF3 regulator of nonsense transcripts homolog B (yeast)
Band: Xq24
Quick LinksEntrez ID:65109; OMIM: 300298; Uniprot ID:REN3B_HUMAN; ENSEMBL ID: ENSG00000125351; HGNC ID: 20439
Relate to Another Database: SFARIGene; denovo-db
Gene Ontology Top
GO ID Evidence Qualifier GO_term References
GO:0005634IDA-nucleus-
GO:0005634NAS-nucleus11163187
GO:0005654TAS-nucleoplasm-
GO:0005730IDA-nucleolus-
GO:0005737NAS-cytoplasm11163187
GO:0005815IDA-microtubule organizing center-
GO:0005829IDA-cytosol-
GO:0005829TAS-cytosol-
GO:0035145IDA-exon-exon junction complex16601204
GO:0035145IDAcolocalizes_withexon-exon junction complex11546873
GO ID Evidence Qualifier GO_term References
GO:0003723IDA-RNA binding22658674
GO:0003729IDA-mRNA binding11546873
GO:0005487NAS-nucleocytoplasmic transporter activity11163187
GO:0005515IPI-protein binding11163187
GO ID Evidence Qualifier GO_term References
GO:0000184IDA-nuclear-transcribed mRNA catabolic process, nonsense-mediated decay16601204
GO:0000184IMP-nuclear-transcribed mRNA catabolic process, nonsense-mediated decay18369367
GO:0000184NAS-nuclear-transcribed mRNA catabolic process, nonsense-mediated decay11163187
GO:0000184TAS-nuclear-transcribed mRNA catabolic process, nonsense-mediated decay-
GO:0000398TAS-mRNA splicing, via spliceosome-
GO:0006369TAS-termination of RNA polymerase II transcription-
GO:0006405TAS-RNA export from nucleus-
GO:0006406TAS-mRNA export from nucleus-
GO:0031124TAS-mRNA 3'-end processing-
GO:0045727IDA-positive regulation of translation16601204
Protein-Protein Interaction Top
Gene Symbol Interactant Interaction ID References Description
UPF3BHBB10929311163187 Protein-RNA
UPF3BHBB12239611163187 Protein-RNA
UPF3BEIF612239616169070 Two-hybrid
UPF3BEIF610989816169070 Two-hybrid
UPF3BUPF111190811163187 12723973 14527413 Affinity Capture-Western
UPF3BUPF112239611163187 12723973 14527413 Affinity Capture-Western
UPF3BEIF4A312239619884259 Affinity Capture-Western; Co-fractionation
UPF3BEIF4A311511919884259 Affinity Capture-Western; Co-fractionation
UPF3BMCRS111571015231747 Two-hybrid
UPF3BMCRS112239615231747 Two-hybrid
UPF3BUPF211749011163187 12417715 14527413 15231747 Affinity Capture-Western; Two-hybrid
UPF3BUPF212239611163187 12417715 14527413 15231747 Affinity Capture-Western; Two-hybrid
UPF3BUSP2112239619615732 Affinity Capture-MS
UPF3BUSP2111795019615732 Affinity Capture-MS
UPF3BTTC1912024815231747 Two-hybrid
UPF3BTTC1912239615231747 Two-hybrid
UPF3AUPF3B12239714527413 Affinity Capture-Western
UPF3AUPF3B12239614527413 Affinity Capture-Western
No data
No data
AlzGene, PDGene and SZGene Top
Animal Model Top
  • MGI ID: MGI:1915384
  • Data Attributes: MGI curated and HomoloGene calculated
SELECT * FROM lijr_20110218_zfin_genotype_phenotype WHERE ZFIN_Gene_ID='ZDB-GENE-040426-1630'