AutismKB 2.0

Annotation Details for SMC1A


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Basic Information Top
Gene Symbol:SMC1A ( CDLS2,DKFZp686L19178,DXS423E,KIAA0178,MGC138332,SB1.8,SMC1,SMC1L1,SMC1alpha,SMCB )
Gene Full Name: structural maintenance of chromosomes 1A
Band: Xp11.22
Quick LinksEntrez ID:8243; OMIM: 300040; Uniprot ID:SMC1A_HUMAN; ENSEMBL ID: ENSG00000072501; HGNC ID: 11111
Relate to Another Database: SFARIGene; denovo-db
Gene Ontology Top
GO ID Evidence Qualifier GO_term References
GO:0000775TAS-chromosome, centromeric region-
GO:0000776IDA-kinetochore11682612
GO:0000777IEA-condensed chromosome kinetochore-
GO:0000794TAS-condensed nuclear chromosome7757074
GO:0005634IDA-nucleus11076961
GO:0005654IDA-nucleoplasm-
GO:0005654TAS-nucleoplasm-
GO:0005694TAS-chromosome-
GO:0005829IDA-cytosol-
GO:0005829TAS-cytosol-
GO:0008278TAS-cohesin complex11076961
GO:0030893IDA-meiotic cohesin complex21242291
GO ID Evidence Qualifier GO_term References
GO:0003682IDA-chromatin binding11076961
GO:0003723IDA-RNA binding22681889
GO:0005515IPI-protein binding11076961
GO:0005524IEA-ATP binding-
GO:0036033IEA-mediator complex binding-
GO:0046982IPI-protein heterodimerization activity11590136
GO ID Evidence Qualifier GO_term References
GO:0000070TAS-mitotic sister chromatid segregation7757074
GO:0006281TAS-DNA repair11877377
GO:0007052TAS-mitotic spindle organization12199140
GO:0007062IMP-sister chromatid cohesion15917200
GO:0007062TAS-sister chromatid cohesion-
GO:0007064TAS-mitotic sister chromatid cohesion12199140
GO:0009314IEP-response to radiation11877377
GO:0019827IEA-stem cell population maintenance-
GO:0032876IMP-negative regulation of DNA endoreduplication15917200
GO:0051301IEA-cell division-
GO:0051321ISS-meiotic cell cycle-
GO:0072423IDA-response to DNA damage checkpoint signaling11877377
Protein-Protein Interaction Top
Gene Symbol Interactant Interaction ID References Description
SMC1AAIRE10682320085707 Affinity Capture-MS; Affinity Capture-Western
SMC1AAIRE11387120085707 Affinity Capture-MS; Affinity Capture-Western
SMC1AATM11387111877376 Affinity Capture-Western; Reconstituted Complex
SMC1AATM10696211877376 Affinity Capture-Western; Reconstituted Complex
SMC1AATR11387115640246 Affinity Capture-Western
SMC1AATR10702715640246 Affinity Capture-Western
SMC1AATRX11387120159591 Affinity Capture-Western
SMC1AATRX10702820159591 Affinity Capture-Western
SMC1ACASP410728717353931 Affinity Capture-MS
SMC1ACASP411387117353931 Affinity Capture-MS
SMC1ACDK410745417353931 Affinity Capture-MS
SMC1ACDK411387117353931 Affinity Capture-MS
SMC1AMSH610921114657349 Reconstituted Complex
SMC1AMSH611387114657349 Reconstituted Complex
SMC1AMGMT11041116226712 Affinity Capture-MS
SMC1AMGMT11387116226712 Affinity Capture-MS
SMC1AMLH111043817148452 Affinity Capture-MS
SMC1AMLH111387117148452 Affinity Capture-MS
SMC1ANUMA111098011590136 Affinity Capture-Western
SMC1ANUMA111387111590136 Affinity Capture-Western
SMC1APHF111127118385154 Affinity Capture-MS; Affinity Capture-Western
SMC1APHF111387118385154 Affinity Capture-MS; Affinity Capture-Western
SMC1APRKAA211387120562859 Affinity Capture-MS
SMC1APRKAA211155020562859 Affinity Capture-MS
SMC1ARAD2111182211590136 19308699 Affinity Capture-Western; Co-localization
SMC1ARAD2111387111590136 19308699 Affinity Capture-Western; Co-localization
SMC1ARPGR11387116043481 Affinity Capture-Western; Reconstituted Complex
SMC1ARPGR11203016043481 Affinity Capture-Western; Reconstituted Complex
SMC3SMC1A1145749789013 11590136 11877376 12759374 Affinity Capture-Western
SMC3SMC1A1138719789013 11590136 11877376 12759374 Affinity Capture-Western
STAG1SMC1A11556411076961 Co-purification
STAG1SMC1A11387111076961 Co-purification
STAG3SMC1A11595711483963 Affinity Capture-Western
STAG3SMC1A11387111483963 Affinity Capture-Western
SMARCA5SMC1A11387112198550 Co-purification
SMARCA5SMC1A11404512198550 Co-purification
SYCP3SMC1A11908112759374 Affinity Capture-Western
SYCP3SMC1A11387112759374 Affinity Capture-Western
REC8SMC1A11530612759374 Affinity Capture-Western
REC8SMC1A11387112759374 Affinity Capture-Western
CHTF18SMC1A12199112930902 Affinity Capture-Western
CHTF18SMC1A11387112930902 Affinity Capture-Western
SRRM1SMC1A11554416159877 Affinity Capture-MS; Affinity Capture-Western; Co-fractionation
SRRM1SMC1A11387116159877 Affinity Capture-MS; Affinity Capture-Western; Co-fractionation
STYXL1SMC1A11387117353931 Affinity Capture-MS
STYXL1SMC1A11966317353931 Affinity Capture-MS
PAXIP1SMC1A11387117925232 Affinity Capture-MS
PAXIP1SMC1A11662517925232 Affinity Capture-MS
CTCFSMC1A11590618219272 Affinity Capture-Western
CTCFSMC1A11387118219272 Affinity Capture-Western
SMC1ASMC1A11387118832153 Affinity Capture-Western
RAE1SMC1A11387118832153 Affinity Capture-Western
RAE1SMC1A11405418832153 Affinity Capture-Western
USP32SMC1A12418919615732 Affinity Capture-MS
USP32SMC1A11387119615732 Affinity Capture-MS
USP13SMC1A11446519615732 Affinity Capture-MS
USP13SMC1A11387119615732 Affinity Capture-MS
CAMKK2SMC1A11588920562859 Affinity Capture-MS
CAMKK2SMC1A11387120562859 Affinity Capture-MS
ATG2ASMC1A11674820562859 Affinity Capture-MS
ATG2ASMC1A11387120562859 Affinity Capture-MS
ATG4CSMC1A11387120562859 Affinity Capture-MS
ATG4CSMC1A12437220562859 Affinity Capture-MS
BECN1SMC1A11422620562859 Affinity Capture-MS
BECN1SMC1A11387120562859 Affinity Capture-MS
No data
No data
AlzGene, PDGene and SZGene Top
Animal Model Top
  • MGI ID: MGI:1344345
  • Data Attributes: MGI curated and HomoloGene calculated
SELECT * FROM lijr_20110218_zfin_genotype_phenotype WHERE ZFIN_Gene_ID='ZDB-GENE-040426-57'