AutismKB 2.0

Annotation Details for SNRNP40


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Basic Information Top
Gene Symbol:SNRNP40 ( 40K,FLJ41108,HPRP8BP,MGC1910,PRP8BP,PRPF8BP,RP11-490K7.3,SPF38,WDR57 )
Gene Full Name: small nuclear ribonucleoprotein 40kDa (U5)
Band: 1p35.2
Quick LinksEntrez ID:9410; OMIM: 607797; Uniprot ID:SNR40_HUMAN; ENSEMBL ID: ENSG00000060688; HGNC ID: 30857
Relate to Another Database: SFARIGene; denovo-db
Gene Ontology Top
GO ID Evidence Qualifier GO_term References
GO:0005654TAS-nucleoplasm-
GO:0005682TAS-U5 snRNP9774689
GO:0005732NAS-small nucleolar ribonucleoprotein complex9774689
GO:0005829IDA-cytosol-
GO:0016607IDA-nuclear speck-
GO:0071011IBA-precatalytic spliceosome-
GO:0071013IDA-catalytic step 2 spliceosome11991638
GO ID Evidence Qualifier GO_term References
GO:0003723IDA-RNA binding22658674
GO:0005515IPI-protein binding9774689
GO ID Evidence Qualifier GO_term References
GO:0000375TAS-RNA splicing, via transesterification reactions9774689
GO:0000398IC-mRNA splicing, via spliceosome11991638
GO:0000398TAS-mRNA splicing, via spliceosome-
GO:0006396TAS-RNA processing9774689
GO:0008380TAS-RNA splicing9774689
Protein-Protein Interaction Top
Gene Symbol Interactant Interaction ID References Description
SNRNP40DDR110723416169070 Two-hybrid
SNRNP40DDR111480516169070 Two-hybrid
SNRNP40MAGEA611027917353931 Affinity Capture-MS
SNRNP40MAGEA611480517353931 Affinity Capture-MS
SNRNP40PFDN211122417353931 Affinity Capture-MS
SNRNP40PFDN211480517353931 Affinity Capture-MS
SNRNP40PML11138418212063 Affinity Capture-MS
SNRNP40PML11480518212063 Affinity Capture-MS
SNRNP40RARA11480518212063 Affinity Capture-MS
SNRNP40RARA11184918212063 Affinity Capture-MS
SNRNP40SNRPB211251317353931 Affinity Capture-MS
SNRNP40SNRPB211480517353931 Affinity Capture-MS
SNRNP40CUL4B11402817041588 Affinity Capture-Western
SNRNP40CUL4B11480517041588 Affinity Capture-Western
SNRNP40CUL4A11402917041588 Affinity Capture-Western
SNRNP40CUL4A11480517041588 Affinity Capture-Western
SNRNP40PRPF411457619615732 Affinity Capture-MS
SNRNP40PRPF411480519615732 Affinity Capture-MS
SNRNP40EFTUD21147499774689 17353931 Affinity Capture-MS; Reconstituted Complex
SNRNP40EFTUD21148059774689 17353931 Affinity Capture-MS; Reconstituted Complex
PRPF8SNRNP401158429774689 17353931 Affinity Capture-MS; Far Western; Reconstituted Complex
PRPF8SNRNP401148059774689 17353931 Affinity Capture-MS; Far Western; Reconstituted Complex
SRRM1SNRNP4011554416159877 Affinity Capture-MS
SRRM1SNRNP4011480516159877 Affinity Capture-MS
WDR5SNRNP4011627217041588 Affinity Capture-Western
WDR5SNRNP4011480517041588 Affinity Capture-Western
CD2BP2SNRNP4011569017353931 Affinity Capture-MS
CD2BP2SNRNP4011480517353931 Affinity Capture-MS
SNRNP200SNRNP4011666117353931 Affinity Capture-MS
SNRNP200SNRNP4011480517353931 Affinity Capture-MS
SF3B1SNRNP4011480517353931 Affinity Capture-MS
SF3B1SNRNP4011701717353931 Affinity Capture-MS
PRPF6SNRNP4011729817353931 Affinity Capture-MS
PRPF6SNRNP4011480517353931 Affinity Capture-MS
USP39SNRNP4011593919615732 Affinity Capture-MS
USP39SNRNP4011480519615732 Affinity Capture-MS
No data
No data
AlzGene, PDGene and SZGene Top
Animal Model Top
  • MGI ID: MGI:1913835
  • Data Attributes: MGI curated and HomoloGene calculated
SELECT * FROM lijr_20110218_zfin_genotype_phenotype WHERE ZFIN_Gene_ID='ZDB-GENE-040426-978'