AutismKB 2.0

Annotation Detail for XRN1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:XRN1 ( DKFZp434P0721,DKFZp686B22225,DKFZp686F19113,FLJ41903,SEP1 )
Gene Full Name: 5'-3' exoribonuclease 1
Band: 3q23
Quick LinksEntrez ID:54464; OMIM: 607994; Uniprot ID:XRN1_HUMAN; ENSEMBL ID: ENSG00000114127; HGNC ID: 30654
Relate to Another Database: SFARIGene; denovo-db
Related Pathway Information Top
No data
Pathway IDPathway Name
hsa03018RNA degradation
Pathway IDPathway Name
Metabolism of RNA
No data
No data
Pathway IDPathway Name
500857mRNA Decay by 5' to 3' Exoribonuclease
Related Diseases/Disorders Top
Comparative Toxicogenomics Database Top
Chemical ID Chemical Name Interaction Interaction Action Publication
C035207 4-amino-2,6-dinitrotoluene 4-amino-2,6-dinitrotoluene affects the expression of XRN1 mRNAaffects expression 21346803
D017638 Asbestos, Crocidolite Asbestos, Crocidolite results in increased expression of XRN1 mRNAincreases expression 18687144
D001564 Benzo(a)pyrene Benzo(a)pyrene results in decreased expression of XRN1 mRNAdecreases expression 20064835
D003907 Dexamethasone Dexamethasone results in increased expression of XRN1 mRNAincreases expression 17998272
Disease ID Disease Name Direct Evidence Inference Chemical Name Inference Score Publication
MESH:D000014 Abnormalities, Drug-Induced 4-amino-2,6-dinitrotoluene 4.587525203
MESH:D000230 Adenocarcinoma Benzo(a)pyrene 2.0620464547 20127859
MESH:D000236 Adenoma Benzo(a)pyrene 2.866695378
MESH:D017544 Aortic Aneurysm, Abdominal Benzo(a)pyrene 4.6419183758
MESH:D001169 Arthritis, Experimental Dexamethasone 3.7617659584
MESH:D001943 Breast Neoplasms Benzo(a)pyrene 1.9917474063 20146248
MESH:D002294 Carcinoma, Squamous Cell Benzo(a)pyrene 2.1320419170
MESH:D002386 Cataract 4-amino-2,6-dinitrotoluene 3.8414694615
MESH:D003110 Colonic Neoplasms Dexamethasone 2.5415824018
MESH:D000013 Congenital Abnormalities 4-amino-2,6-dinitrotoluene 4.5315095906
MESH:D019465 Craniofacial Abnormalities Dexamethasone 2.2917728286
MESH:D017449 Dermatitis, Allergic Contact Dexamethasone 3.9612438553
MESH:D003967 Diarrhea Dexamethasone 4.207237001
MESH:D056486 Drug-Induced Liver Injury 4-amino-2,6-dinitrotoluene 2.7221346803
MESH:D004485 Eczema Dexamethasone 4.9712438553
MESH:D004487 Edema Dexamethasone 3.8219703484
MESH:D004938 Esophageal Neoplasms Benzo(a)pyrene 2.0816530937
MESH:D006330 Heart Defects, Congenital Benzo(a)pyrene 2.8320471113
MESH:D006548 Hernia, Diaphragmatic Dexamethasone 3.187520565
MESH:D006973 Hypertension Dexamethasone 3.0517042910
MESH:D007249 Inflammation Dexamethasone 3.058960868 11099482
MESH:D008106 Liver Cirrhosis, Experimental Dexamethasone 2.2716718785
MESH:D008113 Liver Neoplasms Benzo(a)pyrene 2.1521137059 20195826
MESH:D055370 Lung Injury Asbestos, Crocidolite 4.5817365036
MESH:D008175 Lung Neoplasms Benzo(a)pyrene 2.6518569708 20135361 18816296 20064080 18520028 20869020 17053015 6695378 20464547
MESH:D008175 Lung Neoplasms Dexamethasone 2.6511195469 15824018
MESH:D008654 Mesothelioma Asbestos, Crocidolite 3.3116966607 16166281 18303189
MESH:D009062 Mouth Neoplasms Benzo(a)pyrene 3.5016381670
MESH:D009101 Multiple Myeloma Dexamethasone 3.7815867202 16118317 15744524
MESH:D009190 Myelodysplastic Syndromes Dexamethasone 3.749809623
MESH:D009369 Neoplasms Benzo(a)pyrene 2.3311141357
MESH:D009784 Occupational Diseases 4-amino-2,6-dinitrotoluene 4.4914694615
MESH:D010995 Pleural Diseases Asbestos, Crocidolite 5.4510923243
MESH:D054198 Precursor Cell Lymphoblastic Leukemia-Lymphoma Dexamethasone 3.7421297632
MESH:D011471 Prostatic Neoplasms Benzo(a)pyrene 2.9117292933
MESH:D011658 Pulmonary Fibrosis Asbestos, Crocidolite 3.1517322281 17975199 15814490 17365031
MESH:D012128 Respiratory Distress Syndrome, Adult Dexamethasone 4.4811700416 18379247
MESH:D012878 Skin Neoplasms Benzo(a)pyrene 2.5210029692 19755658
MESH:D013272 Stomach Diseases Dexamethasone 4.9515472012
MESH:D013274 Stomach Neoplasms Benzo(a)pyrene 1.5620155912 2093021
MESH:D013276 Stomach Ulcer Dexamethasone 3.9115138204
MESH:D001749 Urinary Bladder Neoplasms Benzo(a)pyrene 2.3017053015
MESH:D014605 Uveitis Dexamethasone 5.541336536
Pathway ID Pathway Name
REACT:21257 Metabolism of RNA
KEGG:03008 Ribosome biogenesis in eukaryotes
KEGG:03018 RNA degradation
Pharmacogenomics Knowledge Base Top
Drug Bank Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018