AutismKB 2.0

Annotation Detail for TOM1


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Basic Information Top
Gene Symbol:TOM1 ( FLJ33404 )
Gene Full Name: target of myb1 (chicken)
Band: 22q12.3
Quick LinksEntrez ID:10043; OMIM: 604700; Uniprot ID:TOM1_HUMAN; ENSEMBL ID: ENSG00000100284; HGNC ID: 11982
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst1 / 6231916
fetus46 / 56401281
neonate13 / 31097418
infant3 / 23620127
juvenile4 / 5555671
adult165 / 193912185
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor10 / 94178106
cervical tumor3 / 3436687
chondrosarcoma2 / 8282324
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor30 / 263845113
glioma11 / 106883102
head and neck tumor10 / 13630273
kidney tumor8 / 68959116
leukemia8 / 9584283
liver tumor7 / 9635972
lung tumor9 / 10312787
lymphoma3 / 7175541
non-neoplasia11 / 97250113
normal480 / 3360307142
ovarian tumor1 / 7668213
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS36 / 125680286
prostate cancer10 / 10268097
retinoblastoma0 / 463560 
skin tumor7 / 12494956
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland7 / 33197210
ascites0 / 400150 
bladder0 / 297570 
blood31 / 123478251
bone3 / 7165541
bone marrow0 / 488010 
brain194 / 1100989176
cervix3 / 4817162
connective tissue16 / 149255107
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus1 / 2020949
eye13 / 21105461
heart12 / 89626133
intestine22 / 23447293
kidney31 / 211777146
larynx2 / 2414582
liver18 / 20774386
lung24 / 33697471
lymph0 / 442700 
lymph node5 / 9161054
mammary gland15 / 15327197
mouth13 / 67052193
muscle4 / 10771537
nerve1 / 1576863
ovary5 / 10205148
pancreas11 / 21481251
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta56 / 280825199
prostate28 / 189345147
salivary gland1 / 2015549
skin29 / 210574137
spleen14 / 53952259
stomach3 / 9661931
testis21 / 33044263
thymus18 / 81131221
thyroid4 / 4747384
tonsil1 / 1699958
trachea5 / 5241395
umbilical cord2 / 13680146
uterus20 / 23287885
vascular6 / 51780115
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202807_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.35
Adipocyte3.35
AdrenalCortex3.55
Adrenalgland2.95
Amygdala3.65
Appendix3.3
AtrioventricularNode2.5
BDCA4+_DentriticCells12.05
Bonemarrow3.4
BronchialEpithelialCells3.3
CD105+_Endothelial4.15
CD14+_Monocytes33.15
CD19+_BCells(neg._sel.)3.7
CD33+_Myeloid45.15
CD34+4.4
CD4+_Tcells3.85
CD56+_NKCells8.5
CD71+_EarlyErythroid3.15
CD8+_Tcells3.55
CardiacMyocytes4.15
Caudatenucleus3.05
Cerebellum2.7
CerebellumPeduncles3.8
CiliaryGanglion2.3
CingulateCortex8.7
Colorectaladenocarcinoma3.3
DorsalRootGanglion2.5
FetalThyroid3.3
Fetalbrain3.4
Fetalliver2.9
Fetallung2.9
GlobusPallidus2.45
Heart14.8
Hypothalamus3.8
Kidney5.7
Leukemia_chronicMyelogenousK-5623.05
Leukemia_promyelocytic-HL-602.95
Leukemialymphoblastic(MOLT-4)2.75
Liver4.35
Lung6.55
Lymphnode2.95
Lymphoma_burkitts(Daudi)4.25
Lymphoma_burkitts(Raji)4.6
MedullaOblongata3.1
OccipitalLobe3.05
OlfactoryBulb2.65
Ovary2.2
Pancreas2.65
PancreaticIslet3.6
ParietalLobe3.5
Pituitary3.95
Placenta16.6
Pons3.2
PrefrontalCortex7.35
Prostate4
Salivarygland2.7
SkeletalMuscle3.95
Skin2.5
SmoothMuscle3.85
Spinalcord3.6
SubthalamicNucleus3.1
SuperiorCervicalGanglion3.75
TemporalLobe4.35
Testis2.9
TestisGermCell2.9
TestisIntersitial2.85
TestisLeydigCell3.3
TestisSeminiferousTubule2.85
Thalamus5.4
Thymus2.7
Thyroid4.3
Tongue3.25
Tonsil3.25
Trachea3.45
TrigeminalGanglion3.2
Uterus2.75
UterusCorpus2.95
WholeBlood8.65
Wholebrain2.95
colon3.35
pineal_day4.6
pineal_night4.54
retina4.325
small_intestine3.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10522_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.17 ± 0.95
Basal Forebrain8.96 ± 0.4
Basal Part of Pons8.91 ± 0.76
Cerebellar Cortex8.22 ± 0.43
Cerebellar Nuclei9.03 ± 0.42
Claustrum9.5 ± 0.82
Epithalamus8.16 ± 0.75
Frontal Lobe8.81 ± 0.71
Globus Pallidus9.55 ± 0.41
Hypothalamus8.81 ± 0.48
Insula8.57 ± 0.54
Limbic Lobe8.94 ± 0.75
Mesencephalon8.99 ± 0.58
Myelencephalon8.89 ± 0.7
Occipital Lobe8.74 ± 0.76
Parietal Lobe8.78 ± 0.6
Pontine Tegmentum8.67 ± 0.5
Striatum9.06 ± 0.71
Subthalamus9 ± 0.17
Temporal Lobe8.71 ± 0.76
Thalamus8.91 ± 0.57
White Matter9.17 ± 0.4
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tom1CBCerebellum8.48
17.12
Tom1CTXCerebral cortex13.06
10.2
Tom1HIPHippocampal region3.23
3.39
Tom1HPFHippocampal formation2.79
2.64
Tom1HYHypothalamus5.59
4.96
Tom1LSXLateral septal complex5.78
4.78
Tom1MBMidbrain2.52
3.67
Tom1MYMedulla0.84
1.53
Tom1OLFOlfactory bulb8.61
8.85
Tom1PPons1.85
4.19
Tom1PALPallidum5.83
5.91
Tom1RHPRetrohippocampal region2.01
1.55
Tom1sAMYStriatum-like amygdalar nuclei0.82
0.79
Tom1STRStriatum1.76
1.67
Tom1STRdStriatum dorsal region1.15
1.36
Tom1STRvStriatum ventral region3.02
2.19
Tom1THThalamus8.79
8.26
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00032066 26 453 478 AADRLPNLSSPSAEGPPGPPSGPAPR Peptide Atlas
TOM1_HUMAN_1 16 1 16 MDFLLGNPFSSPVGQR PRIDE
TOM1_HUMAN_106 23 106 128 NNPPTIVHDKVLNLIQSWADAFR PRIDE
TOM1_HUMAN_116 13 116 128 VLNLIQSWADAFR PRIDE
TOM1_HUMAN_146 21 146 166 KGLEFPMTDLDMLSPIHTPQR PRIDE
TOM1_HUMAN_147 21 147 167 KGLEFPMTDLDMLSPIHTPQR PRIDE
TOM1_HUMAN_148 20 148 167 GLEFPMTDLDMLSPIHTPQR PRIDE
TOM1_HUMAN_2 15 2 16 DFLLGNPFSSPVGQR PRIDE
TOM1_HUMAN_222 11 222 232 SELEMVSGNVR PRIDE
TOM1_HUMAN_251 9 251 259 LELLQELNR PRIDE
TOM1_HUMAN_362 12 362 373 LEDEFDMFALTR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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