AutismKB 2.0

Annotation Detail for RANBP9


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:RANBP9 ( BPM-L,BPM90,RANBPM,RanBP7 )
Gene Full Name: RAN binding protein 9
Band: 6p23
Quick LinksEntrez ID:10048; OMIM: 603854; Uniprot ID:RANB9_HUMAN; ENSEMBL ID: ENSG00000010017; HGNC ID: 13727
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst2 / 6231932
fetus53 / 56401293
neonate0 / 310970 
infant0 / 236200 
juvenile6 / 55556107
adult113 / 193912158
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor3 / 3436687
chondrosarcoma5 / 8282360
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor6 / 26384522
glioma5 / 10688346
head and neck tumor16 / 136302117
kidney tumor3 / 6895943
leukemia6 / 9584262
liver tumor12 / 96359124
lung tumor2 / 10312719
lymphoma3 / 7175541
non-neoplasia5 / 9725051
normal195 / 336030758
ovarian tumor3 / 7668239
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer7 / 10268068
retinoblastoma2 / 4635643
skin tumor1 / 1249498
soft tissue/muscle tissue tumor16 / 125191127
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood5 / 12347840
bone3 / 7165541
bone marrow4 / 4880181
brain25 / 110098922
cervix3 / 4817162
connective tissue9 / 14925560
ear2 / 16212123
embryonic tissue15 / 21572269
esophagus0 / 202090 
eye6 / 21105428
heart16 / 89626178
intestine10 / 23447242
kidney9 / 21177742
larynx4 / 24145165
liver15 / 20774372
lung21 / 33697462
lymph1 / 4427022
lymph node9 / 9161098
mammary gland12 / 15327178
mouth11 / 67052164
muscle11 / 107715102
nerve0 / 157680 
ovary4 / 10205139
pancreas8 / 21481237
parathyroid3 / 20539146
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta13 / 28082546
prostate10 / 18934552
salivary gland1 / 2015549
skin13 / 21057461
spleen0 / 539520 
stomach6 / 9661962
testis25 / 33044275
thymus6 / 8113173
thyroid2 / 4747342
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus13 / 23287855
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202583_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts92.6
Adipocyte71.7
AdrenalCortex17.4
Adrenalgland20.35
Amygdala84.05
Appendix13
AtrioventricularNode15.25
BDCA4+_DentriticCells66.35
Bonemarrow24.8
BronchialEpithelialCells46
CD105+_Endothelial15.75
CD14+_Monocytes27.4
CD19+_BCells(neg._sel.)42.6
CD33+_Myeloid43.05
CD34+40.65
CD4+_Tcells60.7
CD56+_NKCells39.65
CD71+_EarlyErythroid93.8
CD8+_Tcells91
CardiacMyocytes46.85
Caudatenucleus29.55
Cerebellum26.5
CerebellumPeduncles36.1
CiliaryGanglion14.6
CingulateCortex60.7
Colorectaladenocarcinoma39.25
DorsalRootGanglion11.35
FetalThyroid18.65
Fetalbrain50.35
Fetalliver31.05
Fetallung34.35
GlobusPallidus40.25
Heart27.05
Hypothalamus59.1
Kidney17.35
Leukemia_chronicMyelogenousK-56265.5
Leukemia_promyelocytic-HL-6029.45
Leukemialymphoblastic(MOLT-4)109.65
Liver13.9
Lung18.4
Lymphnode34.05
Lymphoma_burkitts(Daudi)40.25
Lymphoma_burkitts(Raji)25.7
MedullaOblongata44.95
OccipitalLobe63.05
OlfactoryBulb16.2
Ovary25
Pancreas19.8
PancreaticIslet28.5
ParietalLobe52.75
Pituitary40.55
Placenta90.6
Pons26.85
PrefrontalCortex81.75
Prostate30.15
Salivarygland22.3
SkeletalMuscle18.7
Skin25.5
SmoothMuscle52.65
Spinalcord24.6
SubthalamicNucleus67.95
SuperiorCervicalGanglion27.65
TemporalLobe28.45
Testis113.1
TestisGermCell350.5
TestisIntersitial701.8
TestisLeydigCell430.8
TestisSeminiferousTubule255.75
Thalamus44
Thymus17.4
Thyroid35.1
Tongue32.5
Tonsil55.35
Trachea30.6
TrigeminalGanglion16.25
Uterus21.55
UterusCorpus22.6
WholeBlood32.1
Wholebrain70.8
colon25.4
pineal_day89.7
pineal_night95.08
retina34.625
small_intestine21.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_531_PI416408490
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.8 ± 0.33
Basal Forebrain7.79 ± 0.14
Basal Part of Pons8.03 ± 0.16
Cerebellar Cortex7.88 ± 0.27
Cerebellar Nuclei7.79 ± 0.2
Claustrum7.59 ± 0.3
Epithalamus7.74 ± 0.34
Frontal Lobe7.92 ± 0.28
Globus Pallidus7.67 ± 0.42
Hypothalamus7.75 ± 0.26
Insula7.84 ± 0.27
Limbic Lobe7.81 ± 0.34
Mesencephalon7.85 ± 0.47
Myelencephalon7.77 ± 0.36
Occipital Lobe7.67 ± 0.41
Parietal Lobe7.93 ± 0.33
Pontine Tegmentum7.74 ± 0.32
Striatum7.4 ± 0.32
Subthalamus8.01 ± 0.21
Temporal Lobe7.92 ± 0.27
Thalamus7.73 ± 0.3
White Matter7.5 ± 0.23
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ranbp9CBCerebellum28.4
52.87
Ranbp9CTXCerebral cortex100
100
Ranbp9HIPHippocampal region47.63
91.24
Ranbp9HPFHippocampal formation64.26
87.42
Ranbp9HYHypothalamus17.97
15.65
Ranbp9LSXLateral septal complex29.28
24.44
Ranbp9MBMidbrain41.86
41.33
Ranbp9MYMedulla32.13
36.78
Ranbp9OLFOlfactory bulb62.92
57.04
Ranbp9PPons31.36
36.78
Ranbp9PALPallidum24.1
24.28
Ranbp9RHPRetrohippocampal region92.34
86.39
Ranbp9sAMYStriatum-like amygdalar nuclei55.92
46.57
Ranbp9STRStriatum33.09
25.67
Ranbp9STRdStriatum dorsal region33.89
25.95
Ranbp9STRvStriatum ventral region26.11
19.4
Ranbp9THThalamus52.35
52.55
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00011444 16 714 729 SGIGSCAFATVEDYLH Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved