Annotation Detail for ABCF2


Gene Symbol: | ABCF2 ( ABC28,DKFZp586K1823,EST133090,HUSSY18,M-ABC1 ) |
---|---|
Gene Full Name: | ATP-binding cassette, sub-family F (GCN20), member 2 |
Band: | 7q36.1 |
Quick Links | Entrez ID:10061; OMIM: 612510; Uniprot ID:ABCF2_HUMAN; ENSEMBL ID: ENSG00000033050; HGNC ID: 71 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.654958
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 9 / 70761 | 127 | ![]() |
blastocyst | 11 / 62319 | 176 | ![]() |
fetus | 13 / 564012 | 23 | ![]() |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 4 / 55556 | 71 | ![]() |
adult | 97 / 1939121 | 50 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 9 / 94178 | 95 | ![]() |
cervical tumor | 1 / 34366 | 29 | ![]() |
chondrosarcoma | 14 / 82823 | 169 | ![]() |
colorectal tumor | 9 / 114246 | 78 | ![]() |
esophageal tumor | 1 / 17290 | 57 | ![]() |
gastrointestinal tumor | 16 / 119369 | 134 | ![]() |
germ cell tumor | 13 / 263845 | 49 | ![]() |
glioma | 6 / 106883 | 56 | ![]() |
head and neck tumor | 5 / 136302 | 36 | ![]() |
kidney tumor | 3 / 68959 | 43 | ![]() |
leukemia | 6 / 95842 | 62 | ![]() |
liver tumor | 9 / 96359 | 93 | ![]() |
lung tumor | 12 / 103127 | 116 | ![]() |
lymphoma | 25 / 71755 | 348 | ![]() |
non-neoplasia | 3 / 97250 | 30 | ![]() |
normal | 113 / 3360307 | 33 | ![]() |
ovarian tumor | 9 / 76682 | 117 | ![]() |
pancreatic tumor | 13 / 104616 | 124 | ![]() |
primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | ![]() |
prostate cancer | 14 / 102680 | 136 | ![]() |
retinoblastoma | 3 / 46356 | 64 | ![]() |
skin tumor | 31 / 124949 | 248 | ![]() |
soft tissue/muscle tissue tumor | 14 / 125191 | 111 | ![]() |
uterine tumor | 4 / 90257 | 44 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 1 / 13106 | 76 | ![]() |
adrenal gland | 0 / 33197 | 0 | |
ascites | 10 / 40015 | 249 | ![]() |
bladder | 0 / 29757 | 0 | |
blood | 8 / 123478 | 64 | ![]() |
bone | 6 / 71655 | 83 | ![]() |
bone marrow | 2 / 48801 | 40 | ![]() |
brain | 30 / 1100989 | 27 | ![]() |
cervix | 1 / 48171 | 20 | ![]() |
connective tissue | 9 / 149255 | 60 | ![]() |
ear | 0 / 16212 | 0 | |
embryonic tissue | 23 / 215722 | 106 | ![]() |
esophagus | 1 / 20209 | 49 | ![]() |
eye | 15 / 211054 | 71 | ![]() |
heart | 1 / 89626 | 11 | ![]() |
intestine | 18 / 234472 | 76 | ![]() |
kidney | 5 / 211777 | 23 | ![]() |
larynx | 2 / 24145 | 82 | ![]() |
liver | 11 / 207743 | 52 | ![]() |
lung | 25 / 336974 | 74 | ![]() |
lymph | 23 / 44270 | 519 | ![]() |
lymph node | 2 / 91610 | 21 | ![]() |
mammary gland | 10 / 153271 | 65 | ![]() |
mouth | 0 / 67052 | 0 | |
muscle | 10 / 107715 | 92 | ![]() |
nerve | 3 / 15768 | 190 | ![]() |
ovary | 11 / 102051 | 107 | ![]() |
pancreas | 13 / 214812 | 60 | ![]() |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 18 / 280825 | 64 | ![]() |
prostate | 15 / 189345 | 79 | ![]() |
salivary gland | 2 / 20155 | 99 | ![]() |
skin | 33 / 210574 | 156 | ![]() |
spleen | 2 / 53952 | 37 | ![]() |
stomach | 2 / 96619 | 20 | ![]() |
testis | 15 / 330442 | 45 | ![]() |
thymus | 0 / 81131 | 0 | |
thyroid | 3 / 47473 | 63 | ![]() |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 9 / 232878 | 38 | ![]() |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 207622_s_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 116.7 | ![]() |
Adipocyte | 12.65 | ![]() |
AdrenalCortex | 18.2 | ![]() |
Adrenalgland | 6.4 | ![]() |
Amygdala | 8 | ![]() |
Appendix | 11.45 | ![]() |
AtrioventricularNode | 7.95 | ![]() |
BDCA4+_DentriticCells | 39.1 | ![]() |
Bonemarrow | 10.6 | ![]() |
BronchialEpithelialCells | 26.25 | ![]() |
CD105+_Endothelial | 34.75 | ![]() |
CD14+_Monocytes | 32.05 | ![]() |
CD19+_BCells(neg._sel.) | 12.35 | ![]() |
CD33+_Myeloid | 42.65 | ![]() |
CD34+ | 38.25 | ![]() |
CD4+_Tcells | 58.1 | ![]() |
CD56+_NKCells | 40 | ![]() |
CD71+_EarlyErythroid | 14 | ![]() |
CD8+_Tcells | 49.7 | ![]() |
CardiacMyocytes | 25.75 | ![]() |
Caudatenucleus | 9.85 | ![]() |
Cerebellum | 8.55 | ![]() |
CerebellumPeduncles | 14.25 | ![]() |
CiliaryGanglion | 5.65 | ![]() |
CingulateCortex | 10.9 | ![]() |
Colorectaladenocarcinoma | 47.5 | ![]() |
DorsalRootGanglion | 7.4 | ![]() |
FetalThyroid | 7.8 | ![]() |
Fetalbrain | 8.45 | ![]() |
Fetalliver | 6.9 | ![]() |
Fetallung | 8.05 | ![]() |
GlobusPallidus | 8.3 | ![]() |
Heart | 19 | ![]() |
Hypothalamus | 12.35 | ![]() |
Kidney | 6.55 | ![]() |
Leukemia_chronicMyelogenousK-562 | 24.6 | ![]() |
Leukemia_promyelocytic-HL-60 | 15.6 | ![]() |
Leukemialymphoblastic(MOLT-4) | 35.45 | ![]() |
Liver | 14.25 | ![]() |
Lung | 24.6 | ![]() |
Lymphnode | 12.45 | ![]() |
Lymphoma_burkitts(Daudi) | 23.2 | ![]() |
Lymphoma_burkitts(Raji) | 19.75 | ![]() |
MedullaOblongata | 9.35 | ![]() |
OccipitalLobe | 14 | ![]() |
OlfactoryBulb | 7.5 | ![]() |
Ovary | 5.7 | ![]() |
Pancreas | 8.45 | ![]() |
PancreaticIslet | 8 | ![]() |
ParietalLobe | 17.35 | ![]() |
Pituitary | 10.4 | ![]() |
Placenta | 13.6 | ![]() |
Pons | 11.25 | ![]() |
PrefrontalCortex | 19.75 | ![]() |
Prostate | 9.8 | ![]() |
Salivarygland | 6.25 | ![]() |
SkeletalMuscle | 16.05 | ![]() |
Skin | 7.2 | ![]() |
SmoothMuscle | 83.4 | ![]() |
Spinalcord | 10.85 | ![]() |
SubthalamicNucleus | 13.4 | ![]() |
SuperiorCervicalGanglion | 11.6 | ![]() |
TemporalLobe | 13.55 | ![]() |
Testis | 7.75 | ![]() |
TestisGermCell | 10.6 | ![]() |
TestisIntersitial | 9.7 | ![]() |
TestisLeydigCell | 10.75 | ![]() |
TestisSeminiferousTubule | 8.6 | ![]() |
Thalamus | 22.1 | ![]() |
Thymus | 9.25 | ![]() |
Thyroid | 12.65 | ![]() |
Tongue | 11.15 | ![]() |
Tonsil | 9 | ![]() |
Trachea | 6.15 | ![]() |
TrigeminalGanglion | 11.8 | ![]() |
Uterus | 7.05 | ![]() |
UterusCorpus | 7.4 | ![]() |
WholeBlood | 7.45 | ![]() |
Wholebrain | 10.65 | ![]() |
colon | 10.7 | ![]() |
pineal_day | 36.84 | ![]() |
pineal_night | 33.46 | ![]() |
retina | 26.5 | ![]() |
small_intestine | 10.15 | ![]() |
- Probe name: CUST_15809_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 5.56 ± 0.36 | ![]() ![]() ![]() |
Basal Forebrain | 5.43 ± 0.48 | ![]() ![]() ![]() |
Basal Part of Pons | 5.8 ± 0.3 | ![]() ![]() ![]() |
Cerebellar Cortex | 5.26 ± 0.29 | ![]() ![]() ![]() |
Cerebellar Nuclei | 5.55 ± 0.39 | ![]() ![]() ![]() |
Claustrum | 5.65 ± 0.41 | ![]() ![]() ![]() |
Epithalamus | 5.03 ± 0.45 | ![]() ![]() ![]() |
Frontal Lobe | 5.53 ± 0.35 | ![]() ![]() ![]() |
Globus Pallidus | 5.95 ± 0.18 | ![]() ![]() ![]() |
Hypothalamus | 5.47 ± 0.31 | ![]() ![]() ![]() |
Insula | 5.43 ± 0.34 | ![]() ![]() ![]() |
Limbic Lobe | 5.64 ± 0.45 | ![]() ![]() ![]() |
Mesencephalon | 5.55 ± 0.42 | ![]() ![]() ![]() |
Myelencephalon | 5.54 ± 0.38 | ![]() ![]() ![]() |
Occipital Lobe | 5.84 ± 0.38 | ![]() ![]() ![]() |
Parietal Lobe | 5.69 ± 0.36 | ![]() ![]() ![]() |
Pontine Tegmentum | 5.51 ± 0.41 | ![]() ![]() ![]() |
Striatum | 5.47 ± 0.47 | ![]() ![]() ![]() |
Subthalamus | 5.48 ± 0.16 | ![]() ![]() ![]() |
Temporal Lobe | 5.49 ± 0.38 | ![]() ![]() ![]() |
Thalamus | 5.57 ± 0.37 | ![]() ![]() ![]() |
White Matter | 5.63 ± 0.35 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Abcf2 | CB | Cerebellum | 32.05 | ![]() |
49.55 | ![]() | |||
Abcf2 | CTX | Cerebral cortex | 100 | ![]() |
73.98 | ![]() | |||
Abcf2 | HIP | Hippocampal region | 48.29 | ![]() |
68.77 | ![]() | |||
Abcf2 | HPF | Hippocampal formation | 57.7 | ![]() |
57.67 | ![]() | |||
Abcf2 | HY | Hypothalamus | 43.96 | ![]() |
22.7 | ![]() | |||
Abcf2 | LSX | Lateral septal complex | 35.58 | ![]() |
18.96 | ![]() | |||
Abcf2 | MB | Midbrain | 68.11 | ![]() |
46.47 | ![]() | |||
Abcf2 | MY | Medulla | 76.19 | ![]() |
70.19 | ![]() | |||
Abcf2 | OLF | Olfactory bulb | 64.13 | ![]() |
41.2 | ![]() | |||
Abcf2 | P | Pons | 70.17 | ![]() |
63.93 | ![]() | |||
Abcf2 | PAL | Pallidum | 50.17 | ![]() |
31.43 | ![]() | |||
Abcf2 | RHP | Retrohippocampal region | 75.27 | ![]() |
45.94 | ![]() | |||
Abcf2 | sAMY | Striatum-like amygdalar nuclei | 38.8 | ![]() |
14.62 | ![]() | |||
Abcf2 | STR | Striatum | 49.39 | ![]() |
21.01 | ![]() | |||
Abcf2 | STRd | Striatum dorsal region | 47.53 | ![]() |
19.43 | ![]() | |||
Abcf2 | STRv | Striatum ventral region | 71.45 | ![]() |
31.62 | ![]() | |||
Abcf2 | TH | Thalamus | 74.7 | ![]() |
49.96 | ![]() |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
ABCF2_HUMAN_2 | 19 | 2 | 20 | PSDLAKKKAAKKKEAAKAR | PRIDE |
ABCF2_HUMAN_442 | 14 | 442 | 455 | LLTGELLPTDGMIR | PRIDE |
PAp00004691 | 17 | 179 | 195 | LAHEDAECEKLMELYER | Peptide Atlas |