AutismKB 2.0

Annotation Detail for SCAMP2


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SCAMP2 ( - )
Gene Full Name: secretory carrier membrane protein 2
Band: 15q24.1
Quick LinksEntrez ID:10066; OMIM: 606912; Uniprot ID:SCAM2_HUMAN; ENSEMBL ID: ENSG00000140497; HGNC ID: 10564
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst1 / 6231916
fetus38 / 56401267
neonate1 / 3109732
infant2 / 2362084
juvenile5 / 5555689
adult221 / 1939121113
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor3 / 12794234
bladder carcinoma3 / 17475171
breast (mammary gland) tumor13 / 94178138
cervical tumor7 / 34366203
chondrosarcoma11 / 82823132
colorectal tumor13 / 114246113
esophageal tumor1 / 1729057
gastrointestinal tumor15 / 119369125
germ cell tumor39 / 263845147
glioma13 / 106883121
head and neck tumor15 / 136302110
kidney tumor7 / 68959101
leukemia15 / 95842156
liver tumor1 / 9635910
lung tumor8 / 10312777
lymphoma13 / 71755181
non-neoplasia9 / 9725092
normal310 / 336030792
ovarian tumor10 / 76682130
pancreatic tumor10 / 10461695
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer11 / 102680107
retinoblastoma2 / 4635643
skin tumor14 / 124949112
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland4 / 33197120
ascites7 / 40015174
bladder2 / 2975767
blood10 / 12347880
bone15 / 71655209
bone marrow6 / 48801122
brain64 / 110098958
cervix7 / 48171145
connective tissue10 / 14925566
ear0 / 162120 
embryonic tissue15 / 21572269
esophagus2 / 2020998
eye15 / 21105471
heart8 / 8962689
intestine42 / 234472179
kidney23 / 211777108
larynx2 / 2414582
liver7 / 20774333
lung36 / 336974106
lymph10 / 44270225
lymph node11 / 91610120
mammary gland23 / 153271150
mouth13 / 67052193
muscle7 / 10771564
nerve0 / 157680 
ovary12 / 102051117
pancreas21 / 21481297
parathyroid3 / 20539146
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta29 / 280825103
prostate26 / 189345137
salivary gland1 / 2015549
skin21 / 21057499
spleen15 / 53952278
stomach6 / 9661962
testis30 / 33044290
thymus8 / 8113198
thyroid3 / 4747363
tonsil3 / 16999176
trachea4 / 5241376
umbilical cord1 / 1368073
uterus19 / 23287881
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218143_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts571.5
Adipocyte122.1
AdrenalCortex104.55
Adrenalgland183.8
Amygdala84.4
Appendix80.65
AtrioventricularNode83.45
BDCA4+_DentriticCells981.45
Bonemarrow117
BronchialEpithelialCells83.35
CD105+_Endothelial97.35
CD14+_Monocytes491.25
CD19+_BCells(neg._sel.)429.7
CD33+_Myeloid507.05
CD34+206.4
CD4+_Tcells292.7
CD56+_NKCells628
CD71+_EarlyErythroid91.85
CD8+_Tcells387
CardiacMyocytes96.15
Caudatenucleus85.6
Cerebellum75.6
CerebellumPeduncles103.1
CiliaryGanglion91.85
CingulateCortex94.05
Colorectaladenocarcinoma101.15
DorsalRootGanglion61.9
FetalThyroid109.45
Fetalbrain76.3
Fetalliver62.25
Fetallung79.3
GlobusPallidus51.95
Heart135.75
Hypothalamus121.6
Kidney96.1
Leukemia_chronicMyelogenousK-562102.2
Leukemia_promyelocytic-HL-6065.35
Leukemialymphoblastic(MOLT-4)76.25
Liver143.15
Lung296.5
Lymphnode125.1
Lymphoma_burkitts(Daudi)100.65
Lymphoma_burkitts(Raji)153.15
MedullaOblongata80.35
OccipitalLobe61.9
OlfactoryBulb157.25
Ovary57.45
Pancreas66.55
PancreaticIslet94.1
ParietalLobe93
Pituitary124.15
Placenta169.65
Pons91.55
PrefrontalCortex93.3
Prostate169.9
Salivarygland58.15
SkeletalMuscle138.85
Skin67.75
SmoothMuscle111.95
Spinalcord182.85
SubthalamicNucleus70.85
SuperiorCervicalGanglion136.3
TemporalLobe74.25
Testis134.1
TestisGermCell98.9
TestisIntersitial82.35
TestisLeydigCell79.8
TestisSeminiferousTubule91.05
Thalamus94.35
Thymus82.7
Thyroid137.25
Tongue103.55
Tonsil90.65
Trachea94.7
TrigeminalGanglion127.45
Uterus76.1
UterusCorpus158.8
WholeBlood198.6
Wholebrain64.7
colon112.95
pineal_day130.86
pineal_night97.5
retina116.25
small_intestine106.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1677_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.14 ± 0.93
Basal Forebrain5.17 ± 0.54
Basal Part of Pons5.35 ± 0.59
Cerebellar Cortex4.96 ± 0.52
Cerebellar Nuclei5.43 ± 0.7
Claustrum5.48 ± 1.14
Epithalamus5.54 ± 0.41
Frontal Lobe5.21 ± 0.59
Globus Pallidus5.99 ± 0.56
Hypothalamus4.84 ± 0.4
Insula4.88 ± 0.41
Limbic Lobe5.17 ± 0.68
Mesencephalon5.22 ± 0.63
Myelencephalon5.32 ± 0.67
Occipital Lobe5.12 ± 0.7
Parietal Lobe5.16 ± 0.62
Pontine Tegmentum5.01 ± 0.73
Striatum5.49 ± 0.72
Subthalamus5.11 ± 1.37
Temporal Lobe5.17 ± 0.6
Thalamus5.37 ± 0.65
White Matter6.74 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Scamp2CBCerebellum16.39
18.69
Scamp2CTXCerebral cortex16.54
10.73
Scamp2HIPHippocampal region12.86
13.64
Scamp2HPFHippocampal formation12.93
11.61
Scamp2HYHypothalamus4.77
3.3
Scamp2LSXLateral septal complex2.4
1.41
Scamp2MBMidbrain10.63
8.93
Scamp2MYMedulla12.86
12.26
Scamp2OLFOlfactory bulb30.77
23.62
Scamp2PPons8.94
8.96
Scamp2PALPallidum7.71
5.64
Scamp2RHPRetrohippocampal region13.23
9.05
Scamp2sAMYStriatum-like amygdalar nuclei8.1
7.02
Scamp2STRStriatum8.68
6.18
Scamp2STRdStriatum dorsal region8.07
5.91
Scamp2STRvStriatum ventral region11.95
7.24
Scamp2THThalamus12.64
9.37
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002200 14 103 116 ERELQNTVANLHVR Peptide Atlas
SCAM2_HUMAN_0 0 0 0 ELQNTVANLHVR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved