AutismKB 2.0

Annotation Detail for CDH10


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Basic Information Top
Gene Symbol:CDH10 ( - )
Gene Full Name: cadherin 10, type 2 (T2-cadherin)
Band: 5p14.2-p14.1
Quick LinksEntrez ID:1008; OMIM: 604555; Uniprot ID:CAD10_HUMAN; ENSEMBL ID: ENSG00000040731; HGNC ID: 1749
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus12 / 56401221
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult13 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor6 / 26384522
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal43 / 336030712
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain23 / 110098920
cervix1 / 4817120
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis5 / 33044215
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220115_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.4
Adipocyte8.05
AdrenalCortex11.05
Adrenalgland8.9
Amygdala41.5
Appendix20.55
AtrioventricularNode8.45
BDCA4+_DentriticCells7.7
Bonemarrow9.4
BronchialEpithelialCells7.8
CD105+_Endothelial7.85
CD14+_Monocytes7.85
CD19+_BCells(neg._sel.)8.1
CD33+_Myeloid9.55
CD34+9.2
CD4+_Tcells7.8
CD56+_NKCells8.3
CD71+_EarlyErythroid7.25
CD8+_Tcells6.8
CardiacMyocytes13.15
Caudatenucleus8.9
Cerebellum11.15
CerebellumPeduncles13.95
CiliaryGanglion7.55
CingulateCortex27.35
Colorectaladenocarcinoma8.55
DorsalRootGanglion8.8
FetalThyroid8.45
Fetalbrain93.7
Fetalliver7.55
Fetallung6.45
GlobusPallidus15.65
Heart11.7
Hypothalamus12.95
Kidney8
Leukemia_chronicMyelogenousK-5627.5
Leukemia_promyelocytic-HL-607.75
Leukemialymphoblastic(MOLT-4)6.35
Liver13.15
Lung9
Lymphnode6.85
Lymphoma_burkitts(Daudi)11.6
Lymphoma_burkitts(Raji)13.45
MedullaOblongata20.55
OccipitalLobe43.1
OlfactoryBulb6.65
Ovary7.1
Pancreas6.85
PancreaticIslet10.3
ParietalLobe17.7
Pituitary10.2
Placenta7.95
Pons21.45
PrefrontalCortex52
Prostate9.65
Salivarygland7.55
SkeletalMuscle14.35
Skin9.5
SmoothMuscle9.3
Spinalcord15.4
SubthalamicNucleus22.65
SuperiorCervicalGanglion20.35
TemporalLobe21.6
Testis7
TestisGermCell7.15
TestisIntersitial7.25
TestisLeydigCell9.5
TestisSeminiferousTubule7.5
Thalamus11.6
Thymus6.4
Thyroid10.05
Tongue9.9
Tonsil9.5
Trachea6.85
TrigeminalGanglion12.05
Uterus6.7
UterusCorpus10.2
WholeBlood8.6
Wholebrain19.1
colon8.15
pineal_day165.68
pineal_night208.24
retina10.925
small_intestine7.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1039_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.31 ± 0.56
Basal Forebrain5.07 ± 0.4
Basal Part of Pons4.64 ± 0.62
Cerebellar Cortex5.28 ± 0.22
Cerebellar Nuclei4.51 ± 0.34
Claustrum5.21 ± 0.67
Epithalamus4.1 ± 0.68
Frontal Lobe5.14 ± 0.53
Globus Pallidus3.84 ± 0.54
Hypothalamus4.59 ± 0.73
Insula5.26 ± 0.39
Limbic Lobe5.06 ± 0.51
Mesencephalon4.93 ± 0.58
Myelencephalon4.92 ± 0.63
Occipital Lobe4.67 ± 0.69
Parietal Lobe4.91 ± 0.43
Pontine Tegmentum4.98 ± 0.78
Striatum3.66 ± 0.66
Subthalamus3.88 ± 0.75
Temporal Lobe5.12 ± 0.44
Thalamus4.89 ± 0.81
White Matter2.46 ± 0.68
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018