Annotation Detail for GPC6
Basic Information Top
| Gene Symbol: | GPC6 ( MGC126288,OMIMD1 ) |
|---|---|
| Gene Full Name: | glypican 6 |
| Band: | 13q31.3-q32.1 |
| Quick Links | Entrez ID:10082; OMIM: 604404; Uniprot ID:GPC6_HUMAN; ENSEMBL ID: ENSG00000183098; HGNC ID: 4454 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.444329
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 9 / 70761 | 127 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 40 / 564012 | 70 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 49 / 1939121 | 25 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 11 / 94178 | 116 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 21 / 263845 | 79 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 5 / 103127 | 48 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 110 / 3360307 | 32 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 21 / 1100989 | 19 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 16 / 149255 | 107 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 26 / 215722 | 120 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 2 / 89626 | 22 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 8 / 336974 | 23 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 10 / 330442 | 30 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_32_P97169
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.18 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.79 ± 0.79 | |
| Basal Part of Pons | 5.82 ± 0.41 | |
| Cerebellar Cortex | 5.44 ± 0.57 | |
| Cerebellar Nuclei | 5.26 ± 0.67 | |
| Claustrum | 5.21 ± 1.01 | |
| Epithalamus | 6.09 ± 0.64 | |
| Frontal Lobe | 5.98 ± 0.63 | |
| Globus Pallidus | 6.12 ± 0.44 | |
| Hypothalamus | 6.06 ± 0.5 | |
| Insula | 6.14 ± 0.31 | |
| Limbic Lobe | 5.37 ± 0.78 | |
| Mesencephalon | 5.9 ± 0.73 | |
| Myelencephalon | 5.87 ± 0.62 | |
| Occipital Lobe | 5.23 ± 0.53 | |
| Parietal Lobe | 5.54 ± 0.66 | |
| Pontine Tegmentum | 5.75 ± 0.62 | |
| Striatum | 6.29 ± 0.58 | |
| Subthalamus | 6.01 ± 0.77 | |
| Temporal Lobe | 5.73 ± 0.52 | |
| Thalamus | 6.09 ± 0.56 | |
| White Matter | 4.22 ± 0.83 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gpc6 | CB | Cerebellum | 16.59 | |
| 16.63 | | |||
| Gpc6 | CTX | Cerebral cortex | 1.2 | |
| 0.92 | | |||
| Gpc6 | HIP | Hippocampal region | 1.47 | |
| 0.91 | | |||
| Gpc6 | HPF | Hippocampal formation | 1.92 | |
| 1.32 | | |||
| Gpc6 | HY | Hypothalamus | 1.2 | |
| 0.66 | | |||
| Gpc6 | LSX | Lateral septal complex | 0.4 | |
| 0.19 | | |||
| Gpc6 | MB | Midbrain | 0.77 | |
| 1.03 | | |||
| Gpc6 | MY | Medulla | 3.24 | |
| 2.23 | | |||
| Gpc6 | OLF | Olfactory bulb | 2.94 | |
| 3.51 | | |||
| Gpc6 | P | Pons | 2.5 | |
| 2.49 | | |||
| Gpc6 | PAL | Pallidum | 0.22 | |
| 0.16 | | |||
| Gpc6 | RHP | Retrohippocampal region | 2.58 | |
| 1.94 | | |||
| Gpc6 | sAMY | Striatum-like amygdalar nuclei | 4.32 | |
| 2.64 | | |||
| Gpc6 | STR | Striatum | 1.03 | |
| 0.67 | | |||
| Gpc6 | STRd | Striatum dorsal region | 0.82 | |
| 0.57 | | |||
| Gpc6 | STRv | Striatum ventral region | 0.5 | |
| 0.34 | | |||
| Gpc6 | TH | Thalamus | 0.78 | |
| 0.47 | |