AutismKB 2.0

Annotation Detail for CDH12


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Basic Information Top
Gene Symbol:CDH12 ( CDHB,FLJ34857 )
Gene Full Name: cadherin 12, type 2 (N-cadherin 2)
Band: 5p14.3
Quick LinksEntrez ID:1010; OMIM: 600562; Uniprot ID:CAD12_HUMAN; ENSEMBL ID: ENSG00000154162; HGNC ID: 1751
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus10 / 56401217
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult26 / 193912113
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor6 / 26384522
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal31 / 33603079
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor13 / 125191103
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain25 / 110098922
cervix0 / 481710 
connective tissue13 / 14925587
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis10 / 33044230
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207149_at
Cell line Expression level Expression bar
721_B_lymphoblasts28.15
Adipocyte5.25
AdrenalCortex6.65
Adrenalgland4.65
Amygdala5.55
Appendix14.15
AtrioventricularNode6.5
BDCA4+_DentriticCells5.45
Bonemarrow5.35
BronchialEpithelialCells5.05
CD105+_Endothelial5.25
CD14+_Monocytes5.65
CD19+_BCells(neg._sel.)5.55
CD33+_Myeloid6.45
CD34+6.5
CD4+_Tcells5.35
CD56+_NKCells6.05
CD71+_EarlyErythroid5
CD8+_Tcells4.95
CardiacMyocytes7.7
Caudatenucleus4.75
Cerebellum4.3
CerebellumPeduncles6.3
CiliaryGanglion4.25
CingulateCortex5.5
Colorectaladenocarcinoma5.25
DorsalRootGanglion4.4
FetalThyroid5.2
Fetalbrain5.25
Fetalliver4.6
Fetallung4.05
GlobusPallidus4.2
Heart7.2
Hypothalamus5.7
Kidney4.45
Leukemia_chronicMyelogenousK-5624.75
Leukemia_promyelocytic-HL-604.6
Leukemialymphoblastic(MOLT-4)4.2
Liver7.3
Lung5.7
Lymphnode4.4
Lymphoma_burkitts(Daudi)6.8
Lymphoma_burkitts(Raji)7.8
MedullaOblongata4.85
OccipitalLobe8.2
OlfactoryBulb4.2
Ovary3.7
Pancreas4.35
PancreaticIslet5.65
ParietalLobe8.5
Pituitary6.7
Placenta5.2
Pons5.15
PrefrontalCortex10.9
Prostate6.15
Salivarygland4.35
SkeletalMuscle6.7
Skin4.3
SmoothMuscle5.9
Spinalcord5.6
SubthalamicNucleus4.95
SuperiorCervicalGanglion7.95
TemporalLobe5
Testis4.5
TestisGermCell4.4
TestisIntersitial4.45
TestisLeydigCell5.3
TestisSeminiferousTubule4.5
Thalamus5.4
Thymus3.95
Thyroid6.35
Tongue5.35
Tonsil5.2
Trachea4.45
TrigeminalGanglion5.95
Uterus4.2
UterusCorpus4.95
WholeBlood5.7
Wholebrain6.1
colon5.25
pineal_day6.5
pineal_night6.46
retina6.375
small_intestine5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P144847
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.45 ± 0.8
Basal Forebrain5.28 ± 0.62
Basal Part of Pons6.57 ± 0.33
Cerebellar Cortex5.64 ± 0.76
Cerebellar Nuclei5.42 ± 0.83
Claustrum7.57 ± 0.39
Epithalamus4.87 ± 1
Frontal Lobe5.69 ± 0.59
Globus Pallidus4.69 ± 0.97
Hypothalamus5.96 ± 0.41
Insula6.13 ± 0.32
Limbic Lobe6.21 ± 0.69
Mesencephalon5.71 ± 0.74
Myelencephalon5.9 ± 0.82
Occipital Lobe6.87 ± 0.57
Parietal Lobe6.22 ± 0.51
Pontine Tegmentum5.79 ± 0.63
Striatum5.36 ± 0.99
Subthalamus6.3 ± 0.55
Temporal Lobe6.28 ± 0.4
Thalamus5.8 ± 0.68
White Matter3.32 ± 0.66
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cdh12CBCerebellum17.2
26.35
Cdh12CTXCerebral cortex47.11
39.44
Cdh12HIPHippocampal region11.7
13.26
Cdh12HPFHippocampal formation12.6
12.83
Cdh12HYHypothalamus3.16
3.36
Cdh12LSXLateral septal complex1.48
1.74
Cdh12MBMidbrain4.27
5
Cdh12MYMedulla5.44
7.11
Cdh12OLFOlfactory bulb24.05
24.02
Cdh12PPons3.11
4.14
Cdh12PALPallidum2.26
2.09
Cdh12RHPRetrohippocampal region15.06
12.92
Cdh12sAMYStriatum-like amygdalar nuclei1.51
1.69
Cdh12STRStriatum1.78
1.83
Cdh12STRdStriatum dorsal region1.58
1.67
Cdh12STRvStriatum ventral region2.55
2.11
Cdh12THThalamus9.55
8.73
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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