Annotation Detail for NUBP2
Basic Information Top
| Gene Symbol: | NUBP2 ( CFD1,NUBP1 ) |
|---|---|
| Gene Full Name: | nucleotide binding protein 2 (MinD homolog, E. coli) |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:10101; OMIM: 610779; Uniprot ID:NUBP2_HUMAN; ENSEMBL ID: ENSG00000095906; HGNC ID: 8042 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.256549
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 9 / 70761 | 127 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 15 / 564012 | 26 | |
| neonate | 1 / 31097 | 32 | |
| infant | 3 / 23620 | 127 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 86 / 1939121 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 13 / 94178 | 138 | |
| cervical tumor | 4 / 34366 | 116 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 9 / 114246 | 78 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 13 / 106883 | 121 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 9 / 68959 | 130 | |
| leukemia | 8 / 95842 | 83 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 16 / 103127 | 155 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 141 / 3360307 | 41 | |
| ovarian tumor | 16 / 76682 | 208 |  |
| pancreatic tumor | 18 / 104616 | 172 | |
| primitive neuroectodermal tumor of the CNS | 15 / 125680 | 119 | |
| prostate cancer | 9 / 102680 | 87 | |
| retinoblastoma | 7 / 46356 | 151 | |
| skin tumor | 19 / 124949 | 152 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 4 / 13106 | 305 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 17 / 123478 | 137 | |
| bone | 9 / 71655 | 125 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 45 / 1100989 | 40 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 20 / 215722 | 92 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 16 / 211054 | 75 | |
| heart | 1 / 89626 | 11 | |
| intestine | 17 / 234472 | 72 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 21 / 336974 | 62 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 15 / 153271 | 97 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 7 / 107715 | 64 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 19 / 102051 | 186 | |
| pancreas | 19 / 214812 | 88 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 17 / 189345 | 89 | |
| salivary gland | 6 / 20155 | 297 | |
| skin | 22 / 210574 | 104 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 3 / 96619 | 31 | |
| testis | 0 / 330442 | 0 | |
| thymus | 9 / 81131 | 110 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_7371_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.62 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.47 ± 0.25 | |
| Basal Part of Pons | 5.65 ± 0.4 | |
| Cerebellar Cortex | 5.79 ± 0.39 | |
| Cerebellar Nuclei | 5.53 ± 0.32 | |
| Claustrum | 5.65 ± 0.31 | |
| Epithalamus | 5.31 ± 0.4 | |
| Frontal Lobe | 5.64 ± 0.39 | |
| Globus Pallidus | 5.68 ± 0.52 | |
| Hypothalamus | 5.63 ± 0.57 | |
| Insula | 5.56 ± 0.34 | |
| Limbic Lobe | 5.53 ± 0.38 | |
| Mesencephalon | 5.6 ± 0.46 | |
| Myelencephalon | 5.58 ± 0.39 | |
| Occipital Lobe | 5.23 ± 0.32 | |
| Parietal Lobe | 5.55 ± 0.31 | |
| Pontine Tegmentum | 5.51 ± 0.35 | |
| Striatum | 5.3 ± 0.25 | |
| Subthalamus | 5.13 ± 0.36 | |
| Temporal Lobe | 5.61 ± 0.38 | |
| Thalamus | 5.56 ± 0.34 | |
| White Matter | 5.84 ± 0.32 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nubp2 | CB | Cerebellum | 8.97 | |
| 16.4 | | |||
| Nubp2 | CTX | Cerebral cortex | 8.43 | |
| 6.51 | | |||
| Nubp2 | HIP | Hippocampal region | 4.39 | |
| 4.72 | | |||
| Nubp2 | HPF | Hippocampal formation | 3.03 | |
| 3.18 | | |||
| Nubp2 | HY | Hypothalamus | 3.03 | |
| 3.43 | | |||
| Nubp2 | LSX | Lateral septal complex | 0.9 | |
| 0.68 | | |||
| Nubp2 | MB | Midbrain | 3.89 | |
| 4.28 | | |||
| Nubp2 | MY | Medulla | 2.24 | |
| 3.18 | | |||
| Nubp2 | OLF | Olfactory bulb | 3.32 | |
| 4.2 | | |||
| Nubp2 | P | Pons | 2.84 | |
| 5.04 | | |||
| Nubp2 | PAL | Pallidum | 1.11 | |
| 1.63 | | |||
| Nubp2 | RHP | Retrohippocampal region | 0.52 | |
| 0.84 | | |||
| Nubp2 | sAMY | Striatum-like amygdalar nuclei | 0.07 | |
| 0.04 | | |||
| Nubp2 | STR | Striatum | 0.38 | |
| 0.35 | | |||
| Nubp2 | STRd | Striatum dorsal region | 0.3 | |
| 0.38 | | |||
| Nubp2 | STRv | Striatum ventral region | 0.52 | |
| 0.31 | | |||
| Nubp2 | TH | Thalamus | 2.03 | |
| 1.77 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| NUBP2_HUMAN_1 | 14 | 1 | 14 | MEAAAEPGNLAGVR | PRIDE |
| NUBP2_HUMAN_234 | 27 | 234 | 260 | TLEEGHDFIQEFPGSPAFAALTSIAQK | PRIDE |
| PAp00079042 | 27 | 235 | 261 | TLEEGHDFIQEFPGSPAFAALTSIAQK | Peptide Atlas |