AutismKB 2.0

Annotation Detail for FAM13A


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Basic Information Top
Gene Symbol:FAM13A ( FAM13A1,FLJ34562,MGC105131 )
Gene Full Name: family with sequence similarity 13, member A
Band: 4q22.1
Quick LinksEntrez ID:10144; OMIM: 613299; Uniprot ID:FA13A_HUMAN; ENSEMBL ID: ENSG00000138640; HGNC ID: 19367
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst3 / 6231948
fetus80 / 564012141
neonate2 / 3109764
infant1 / 2362042
juvenile1 / 5555617
adult125 / 193912164
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma4 / 8282348
colorectal tumor13 / 114246113
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor9 / 26384534
glioma3 / 10688328
head and neck tumor11 / 13630280
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal312 / 336030792
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS10 / 12568079
prostate cancer4 / 10268038
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow4 / 4880181
brain143 / 1100989129
cervix1 / 4817120
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye11 / 21105452
heart8 / 8962689
intestine23 / 23447298
kidney15 / 21177770
larynx1 / 2414541
liver2 / 2077439
lung18 / 33697453
lymph0 / 442700 
lymph node1 / 9161010
mammary gland2 / 15327113
mouth7 / 67052104
muscle7 / 10771564
nerve0 / 157680 
ovary2 / 10205119
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta63 / 280825224
prostate9 / 18934547
salivary gland0 / 201550 
skin8 / 21057437
spleen0 / 539520 
stomach2 / 9661920
testis42 / 330442127
thymus4 / 8113149
thyroid4 / 4747384
tonsil0 / 169990 
trachea12 / 52413228
umbilical cord1 / 1368073
uterus13 / 23287855
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202972_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.05
Adipocyte6.15
AdrenalCortex5.15
Adrenalgland4.7
Amygdala5.25
Appendix5.1
AtrioventricularNode3.8
BDCA4+_DentriticCells5.4
Bonemarrow4.75
BronchialEpithelialCells4.6
CD105+_Endothelial12.4
CD14+_Monocytes5.2
CD19+_BCells(neg._sel.)5.05
CD33+_Myeloid7.55
CD34+6.25
CD4+_Tcells5.35
CD56+_NKCells5.75
CD71+_EarlyErythroid10.2
CD8+_Tcells4.65
CardiacMyocytes5.95
Caudatenucleus4.2
Cerebellum3.8
CerebellumPeduncles6.3
CiliaryGanglion3.45
CingulateCortex6.15
Colorectaladenocarcinoma4.75
DorsalRootGanglion3.75
FetalThyroid48.65
Fetalbrain7.7
Fetalliver4.05
Fetallung6.05
GlobusPallidus3.9
Heart6.2
Hypothalamus5.45
Kidney4.15
Leukemia_chronicMyelogenousK-5624.35
Leukemia_promyelocytic-HL-604.15
Leukemialymphoblastic(MOLT-4)3.6
Liver9.1
Lung5.45
Lymphnode4.1
Lymphoma_burkitts(Daudi)5.95
Lymphoma_burkitts(Raji)6.7
MedullaOblongata6.15
OccipitalLobe4.35
OlfactoryBulb4.4
Ovary3.2
Pancreas4.2
PancreaticIslet5.15
ParietalLobe5.15
Pituitary9.8
Placenta149.55
Pons4.7
PrefrontalCortex44.85
Prostate7.55
Salivarygland3.8
SkeletalMuscle5.6
Skin4.3
SmoothMuscle5.3
Spinalcord5.1
SubthalamicNucleus6.75
SuperiorCervicalGanglion5.7
TemporalLobe5.1
Testis4.25
TestisGermCell7.1
TestisIntersitial4.2
TestisLeydigCell4.6
TestisSeminiferousTubule4.55
Thalamus4.7
Thymus3.95
Thyroid23.1
Tongue5.4
Tonsil4.55
Trachea4.15
TrigeminalGanglion4.9
Uterus6.8
UterusCorpus4.4
WholeBlood5.3
Wholebrain4.2
colon4.95
pineal_day35.36
pineal_night16.94
retina6
small_intestine4.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P7132
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.63 ± 0.84
Basal Forebrain3.23 ± 0.61
Basal Part of Pons2.98 ± 0.66
Cerebellar Cortex3.96 ± 0.34
Cerebellar Nuclei3.44 ± 0.66
Claustrum3.54 ± 0.79
Epithalamus3.25 ± 0.64
Frontal Lobe3.08 ± 0.76
Globus Pallidus2.79 ± 0.62
Hypothalamus3.44 ± 0.68
Insula3.03 ± 0.62
Limbic Lobe3.17 ± 0.68
Mesencephalon3.39 ± 0.75
Myelencephalon3.33 ± 0.62
Occipital Lobe3.33 ± 0.55
Parietal Lobe3.16 ± 0.64
Pontine Tegmentum3.21 ± 0.72
Striatum3.71 ± 0.79
Subthalamus3.28 ± 0.61
Temporal Lobe3.16 ± 0.79
Thalamus3.12 ± 0.65
White Matter3.17 ± 1.14
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
D430015B01RikCBCerebellum40.34
51.94
D430015B01RikCTXCerebral cortex12.45
9.14
D430015B01RikHIPHippocampal region12.67
16.45
D430015B01RikHPFHippocampal formation11.05
12.35
D430015B01RikHYHypothalamus8.8
7.21
D430015B01RikLSXLateral septal complex7.86
5.69
D430015B01RikMBMidbrain12.97
12.85
D430015B01RikMYMedulla34.55
41.18
D430015B01RikOLFOlfactory bulb13.4
10.93
D430015B01RikPPons28.76
31.62
D430015B01RikPALPallidum13.56
12.72
D430015B01RikRHPRetrohippocampal region6.83
4.7
D430015B01RiksAMYStriatum-like amygdalar nuclei5.96
4.22
D430015B01RikSTRStriatum3.86
3.12
D430015B01RikSTRdStriatum dorsal region2.54
2.26
D430015B01RikSTRvStriatum ventral region5.66
4.31
D430015B01RikTHThalamus15.3
13.86
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000967 24 910 933 CFLDQFEDDADGFISPMDDKIPSK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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