AutismKB 2.0

Annotation Detail for CDH18


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Basic Information Top
Gene Symbol:CDH18 ( CDH14,CDH14L,CDH24 )
Gene Full Name: cadherin 18, type 2
Band: 5p14.3
Quick LinksEntrez ID:1016; OMIM: 603019; Uniprot ID:CAD18_HUMAN; ENSEMBL ID: ENSG00000145526; HGNC ID: 1757
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult13 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal42 / 336030712
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain42 / 110098938
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney2 / 2117779
larynx0 / 241450 
liver1 / 2077434
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland3 / 15327119
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary2 / 10205119
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis3 / 3304429
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206280_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.1
Adipocyte5.3
AdrenalCortex5.75
Adrenalgland4.65
Amygdala6
Appendix5.9
AtrioventricularNode9.1
BDCA4+_DentriticCells5.75
Bonemarrow5.3
BronchialEpithelialCells4.45
CD105+_Endothelial5.3
CD14+_Monocytes5.35
CD19+_BCells(neg._sel.)5.95
CD33+_Myeloid7.05
CD34+6.6
CD4+_Tcells5.9
CD56+_NKCells6.6
CD71+_EarlyErythroid5.05
CD8+_Tcells4.85
CardiacMyocytes6.85
Caudatenucleus5.05
Cerebellum8.7
CerebellumPeduncles20.9
CiliaryGanglion4.95
CingulateCortex50.45
Colorectaladenocarcinoma5.05
DorsalRootGanglion4.9
FetalThyroid5.3
Fetalbrain5.5
Fetalliver4.75
Fetallung4.15
GlobusPallidus12.85
Heart6.9
Hypothalamus15.35
Kidney4.45
Leukemia_chronicMyelogenousK-5625
Leukemia_promyelocytic-HL-604.85
Leukemialymphoblastic(MOLT-4)4.45
Liver7.25
Lung5.6
Lymphnode4.55
Lymphoma_burkitts(Daudi)7.05
Lymphoma_burkitts(Raji)7.55
MedullaOblongata10.8
OccipitalLobe15.85
OlfactoryBulb4.2
Ovary3.9
Pancreas4.4
PancreaticIslet5.85
ParietalLobe14.15
Pituitary13.05
Placenta4.6
Pons7.2
PrefrontalCortex81.85
Prostate6.25
Salivarygland4.65
SkeletalMuscle6.45
Skin4.85
SmoothMuscle6.2
Spinalcord5.7
SubthalamicNucleus92.05
SuperiorCervicalGanglion10.4
TemporalLobe24.15
Testis5.5
TestisGermCell5.25
TestisIntersitial5.55
TestisLeydigCell5.6
TestisSeminiferousTubule5.15
Thalamus12.3
Thymus4.1
Thyroid6.1
Tongue5.3
Tonsil5.35
Trachea4.5
TrigeminalGanglion8.95
Uterus4.2
UterusCorpus4.85
WholeBlood5.65
Wholebrain5.4
colon5.35
pineal_day28.7
pineal_night36.88
retina6.45
small_intestine5.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1954_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.14 ± 0.72
Basal Forebrain5.56 ± 0.42
Basal Part of Pons5.33 ± 0.32
Cerebellar Cortex6.06 ± 0.24
Cerebellar Nuclei5.08 ± 0.57
Claustrum4.55 ± 0.84
Epithalamus4.6 ± 0.69
Frontal Lobe5.64 ± 0.51
Globus Pallidus4.21 ± 0.41
Hypothalamus5.35 ± 1.16
Insula5.6 ± 0.27
Limbic Lobe5.37 ± 0.66
Mesencephalon5.1 ± 0.62
Myelencephalon5.36 ± 0.71
Occipital Lobe4.91 ± 0.81
Parietal Lobe5.41 ± 0.58
Pontine Tegmentum5.57 ± 0.76
Striatum4.05 ± 0.69
Subthalamus4.9 ± 0.61
Temporal Lobe5.65 ± 0.45
Thalamus5.55 ± 0.54
White Matter3.4 ± 0.33
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
B230220E17RikCBCerebellum23.76
30.55
B230220E17RikCTXCerebral cortex8.15
6.43
B230220E17RikHIPHippocampal region0.88
1.19
B230220E17RikHPFHippocampal formation5.01
5.34
B230220E17RikHYHypothalamus8.38
6.21
B230220E17RikLSXLateral septal complex3.96
2.74
B230220E17RikMBMidbrain4.06
3.55
B230220E17RikMYMedulla4.97
5.5
B230220E17RikOLFOlfactory bulb3.61
3.45
B230220E17RikPPons3.75
3.69
B230220E17RikPALPallidum4.95
4.17
B230220E17RikRHPRetrohippocampal region9.13
8.55
B230220E17RiksAMYStriatum-like amygdalar nuclei10.88
7.67
B230220E17RikSTRStriatum2.87
2.19
B230220E17RikSTRdStriatum dorsal region2.34
1.97
B230220E17RikSTRvStriatum ventral region0.99
0.75
B230220E17RikTHThalamus2.84
2.2
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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