AutismKB 2.0

Annotation Detail for SLC25A13


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Basic Information Top
Gene Symbol:SLC25A13 ( ARALAR2,CITRIN,CTLN2 )
Gene Full Name: solute carrier family 25, member 13 (citrin)
Band: 7q21.3
Quick LinksEntrez ID:10165; OMIM: 603859; Uniprot ID:CMC2_HUMAN; ENSEMBL ID: ENSG00000004864; HGNC ID: 10983
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst5 / 6231980
fetus24 / 56401242
neonate1 / 3109732
infant0 / 236200 
juvenile3 / 5555653
adult66 / 193912134
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor2 / 3436658
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor2 / 17290115
gastrointestinal tumor8 / 11936967
germ cell tumor45 / 263845170
glioma4 / 10688337
head and neck tumor5 / 13630236
kidney tumor4 / 6895958
leukemia0 / 958420 
liver tumor11 / 96359114
lung tumor3 / 10312729
lymphoma3 / 7175541
non-neoplasia2 / 9725020
normal122 / 336030736
ovarian tumor1 / 7668213
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor9 / 12494972
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland5 / 33197150
ascites4 / 4001599
bladder1 / 2975733
blood1 / 1234788
bone1 / 7165513
bone marrow0 / 488010 
brain38 / 110098934
cervix4 / 4817183
connective tissue3 / 14925520
ear1 / 1621261
embryonic tissue19 / 21572288
esophagus2 / 2020998
eye4 / 21105418
heart6 / 8962666
intestine7 / 23447229
kidney15 / 21177770
larynx0 / 241450 
liver14 / 20774367
lung16 / 33697447
lymph0 / 442700 
lymph node2 / 9161021
mammary gland7 / 15327145
mouth3 / 6705244
muscle2 / 10771518
nerve0 / 157680 
ovary1 / 1020519
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta12 / 28082542
prostate5 / 18934526
salivary gland1 / 2015549
skin11 / 21057452
spleen2 / 5395237
stomach3 / 9661931
testis31 / 33044293
thymus1 / 8113112
thyroid2 / 4747342
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus6 / 23287825
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203775_at
Cell line Expression level Expression bar
721_B_lymphoblasts30.25
Adipocyte15.2
AdrenalCortex16.75
Adrenalgland21.3
Amygdala15.2
Appendix23.4
AtrioventricularNode12.85
BDCA4+_DentriticCells10.75
Bonemarrow19.8
BronchialEpithelialCells23
CD105+_Endothelial18.4
CD14+_Monocytes15.55
CD19+_BCells(neg._sel.)12.9
CD33+_Myeloid17.4
CD34+32.9
CD4+_Tcells11.6
CD56+_NKCells13.25
CD71+_EarlyErythroid12.4
CD8+_Tcells9.8
CardiacMyocytes22.55
Caudatenucleus14.2
Cerebellum11.5
CerebellumPeduncles15.55
CiliaryGanglion11.75
CingulateCortex16.85
Colorectaladenocarcinoma41.8
DorsalRootGanglion16.15
FetalThyroid15.2
Fetalbrain13.6
Fetalliver65
Fetallung13.8
GlobusPallidus12.65
Heart19.05
Hypothalamus49.25
Kidney41.95
Leukemia_chronicMyelogenousK-56259.15
Leukemia_promyelocytic-HL-6013.85
Leukemialymphoblastic(MOLT-4)9.1
Liver171.75
Lung15.45
Lymphnode10.55
Lymphoma_burkitts(Daudi)20.85
Lymphoma_burkitts(Raji)23.1
MedullaOblongata15.35
OccipitalLobe11.85
OlfactoryBulb17.65
Ovary9.6
Pancreas12.7
PancreaticIslet15.35
ParietalLobe24.3
Pituitary17.45
Placenta27.6
Pons15.15
PrefrontalCortex15
Prostate22.15
Salivarygland11.6
SkeletalMuscle19.95
Skin16.4
SmoothMuscle15.95
Spinalcord40.9
SubthalamicNucleus15.85
SuperiorCervicalGanglion28
TemporalLobe14.4
Testis11.2
TestisGermCell10.6
TestisIntersitial10.8
TestisLeydigCell14.4
TestisSeminiferousTubule13.35
Thalamus20.4
Thymus8.75
Thyroid28.55
Tongue14.7
Tonsil14.55
Trachea15.45
TrigeminalGanglion15.8
Uterus11.1
UterusCorpus14.35
WholeBlood13.9
Wholebrain9.6
colon35.85
pineal_day37.9
pineal_night34.72
retina29.05
small_intestine101.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P157402
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.58 ± 0.4
Basal Forebrain7.6 ± 0.36
Basal Part of Pons6.98 ± 0.3
Cerebellar Cortex7.23 ± 0.36
Cerebellar Nuclei8.17 ± 0.62
Claustrum6.86 ± 0.63
Epithalamus7.77 ± 0.29
Frontal Lobe7.08 ± 0.59
Globus Pallidus8.48 ± 0.36
Hypothalamus7.34 ± 0.34
Insula6.75 ± 0.29
Limbic Lobe6.76 ± 0.53
Mesencephalon7.48 ± 0.42
Myelencephalon7.25 ± 0.49
Occipital Lobe7.19 ± 0.62
Parietal Lobe7.12 ± 0.57
Pontine Tegmentum7.32 ± 0.35
Striatum7.41 ± 0.57
Subthalamus7.56 ± 0.31
Temporal Lobe6.95 ± 0.47
Thalamus7.48 ± 0.42
White Matter9.51 ± 0.49
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CMC2_HUMAN_2 10 2 11 AAAKVALTKR PRIDE
CMC2_HUMAN_3 9 3 11 AAKVALTKR PRIDE
CMC2_HUMAN_320 12 320 331 PVLLQVAESAYR PRIDE
PAp00000376 14 554 567 AGQTTYSGVIDCFR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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